RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SAPCD1Q5SSQ6 148 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 OR10AG1Q8NH19 301 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 TTTY13Q9BZ97 58 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 C11orf21Q9P2W6 132 aa12.82□□□□□ -0.36
VPS54-201ENST00000272322 SCGB2A1O75556 95 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 PDE6HQ13956 83 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 HSPB8Q9UJY1 196 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 JMJD1CQ15652 2540 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 ATP5G2Q06055 141 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 HIST2H2BDQ6DRA6 164 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 METTL26Q96S19 204 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 HIF1ANQ9NWT6 349 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 FAM231BA6NCW3 169 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 PTTG1IPP53801 180 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 FAM110DQ8TAY7 271 aaPredicted RBP12.81□□□□□ -0.36
VPS54-201ENST00000272322 ZNF747Q9BV97 191 aa12.81□□□□□ -0.36
VPS54-201ENST00000272322 A1L4Q6 167 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 CLPSL1A2RUU4 121 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 PRB1P04280 392 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 NMUP48645 174 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 VAMP3Q15836 100 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 SLC25A34Q6PIV7 304 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 ZFAND3Q9H8U3 227 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 TRAV41A0A0B4J266 112 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 FABP5P3A8MUU1 101 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 IGKV3-20P01619 116 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 C8orf86Q6ZUL3 223 aa12.8□□□□□ -0.36
VPS54-201ENST00000272322 IGHV4-30-2A0A087WSY4 118 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 ZNF738Q8NE65 137 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 NACAE9PAV3 2078 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 SMAD7O15105 426 aaKnown RBP12.79□□□□□ -0.36
VPS54-201ENST00000272322 TMEM78Q5T7P6 136 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 EEF1AKMT3Q96AZ1 226 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 M0R381 172 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 C1orf122Q6ZSJ8 110 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 CCL19Q99731 98 aa12.79□□□□□ -0.36
VPS54-201ENST00000272322 USP24Q9UPU5 2620 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 BMI1P35226 326 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 ARL3P36405 182 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 C5orf56Q8N8D9 126 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 A0A096LNJ9 63 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 H3BVH4 76 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 EBI3Q14213 229 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 ANKRD39Q53RE8 183 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 DKK2Q9UBU2 259 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 IGKV3D-20A0A0C4DH25 116 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 PAX8Q06710 450 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 C10orf99Q6UWK7 81 aa12.78□□□□□ -0.36
VPS54-201ENST00000272322 DUX5Q96PT3 197 aa12.77□□□□□ -0.36
VPS54-201ENST00000272322 PRSS1P07477 247 aa12.77□□□□□ -0.37
VPS54-201ENST00000272322 SPANXN1Q5VSR9 72 aa12.77□□□□□ -0.37
VPS54-201ENST00000272322 K7EMI3 77 aa12.76□□□□□ -0.37
VPS54-201ENST00000272322 C16orf54Q6UWD8 224 aa12.76□□□□□ -0.37
VPS54-201ENST00000272322 PRRC2AP48634 2157 aaKnown RBP12.76□□□□□ -0.37
VPS54-201ENST00000272322 OOSP1A8MZH6 123 aa12.76□□□□□ -0.37
VPS54-201ENST00000272322 LEPP41159 167 aa12.76□□□□□ -0.37
VPS54-201ENST00000272322 TRAV8-2A0A0B4J237 113 aa12.75□□□□□ -0.37
VPS54-201ENST00000272322 CCL25O15444 150 aa12.75□□□□□ -0.37
VPS54-201ENST00000272322 AVPP01185 164 aa12.75□□□□□ -0.37
VPS54-201ENST00000272322 HIST1H1AQ02539 215 aaPredicted RBP12.75□□□□□ -0.37
VPS54-201ENST00000272322 PRR9Q5T870 116 aa12.75□□□□□ -0.37
VPS54-201ENST00000272322 ZNF575Q86XF7 245 aa12.75□□□□□ -0.37
VPS54-201ENST00000272322 C20orf173Q96LM9 149 aa12.75□□□□□ -0.37
VPS54-201ENST00000272322 IGHV1-69DA0A0B4J2H0 117 aa12.74□□□□□ -0.37
VPS54-201ENST00000272322 IGHV1-69P01742 117 aa12.74□□□□□ -0.37
VPS54-201ENST00000272322 S100A4P26447 101 aaKnown RBP12.74□□□□□ -0.37
VPS54-201ENST00000272322 RAB37Q96AX2 223 aa12.74□□□□□ -0.37
VPS54-201ENST00000272322 PET117Q6UWS5 81 aa12.74□□□□□ -0.37
VPS54-201ENST00000272322 PCP2Q8IVA1 136 aa12.74□□□□□ -0.37
VPS54-201ENST00000272322 PIFOQ8TCI5 191 aa12.74□□□□□ -0.37
VPS54-201ENST00000272322 C7orf71A4D174 169 aa12.73□□□□□ -0.37
VPS54-201ENST00000272322 C21orf62-AS1Q17RA5 79 aa12.73□□□□□ -0.37
VPS54-201ENST00000272322 CLEC2AQ6UVW9 174 aa12.73□□□□□ -0.37
VPS54-201ENST00000272322 IFI27L1Q96BM0 104 aa12.73□□□□□ -0.37
VPS54-201ENST00000272322 MOB4Q9Y3A3 225 aa12.73□□□□□ -0.37
VPS54-201ENST00000272322 NIPBLQ6KC79 2804 aaeCLIP12.73□□□□□ -0.37
VPS54-201ENST00000272322 TNFRSF6BO95407 300 aa12.72□□□□□ -0.37
VPS54-201ENST00000272322 Q6AWC8 147 aa12.72□□□□□ -0.37
VPS54-201ENST00000272322 FBLL1A6NHQ2 334 aaKnown RBP12.72□□□□□ -0.37
VPS54-201ENST00000272322 RNASE4P34096 147 aaKnown RBP12.72□□□□□ -0.37
VPS54-201ENST00000272322 ST20Q9HBF5 79 aa12.72□□□□□ -0.37
VPS54-201ENST00000272322 MRPS16Q9Y3D3 137 aaKnown RBP12.72□□□□□ -0.37
VPS54-201ENST00000272322 CHD6Q8TD26 2715 aa12.72□□□□□ -0.37
VPS54-201ENST00000272322 PIMREGQ9BSJ6 248 aa12.72□□□□□ -0.37
VPS54-201ENST00000272322 CRXO43186 299 aaPredicted RBP12.71□□□□□ -0.37
VPS54-201ENST00000272322 HBDP02042 147 aa12.71□□□□□ -0.37
VPS54-201ENST00000272322 RNF185Q96GF1 192 aa12.71□□□□□ -0.37
VPS54-201ENST00000272322 IGLC6P0CF74 106 aa12.71□□□□□ -0.38
VPS54-201ENST00000272322 TMEM158Q8WZ71 300 aa12.71□□□□□ -0.38
VPS54-201ENST00000272322 ZNF48Q96MX3 618 aaPredicted RBP12.71□□□□□ -0.38
VPS54-201ENST00000272322 MAP1LC3AQ9H492 121 aa12.71□□□□□ -0.38
VPS54-201ENST00000272322 K7EP13 123 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 MGPP08493 103 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 LINC01545Q5VT33 79 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 NEGR1Q7Z3B1 354 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 OR4X2Q8NGF9 303 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 SCRT2Q9NQ03 307 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 TRBV6-1A0A0K0K1D8 114 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 COX11Q9Y6N1 276 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 207 ms