RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BHQ93079 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 ZC2HC1AQ96GY0 325 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BNQ99877 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BMQ99879 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 LENEPQ9Y5L5 61 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HECTD1Q9ULT8 2610 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 RBAKDNA6NC62 111 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 FXYD7P58549 80 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 REC114Q7Z4M0 266 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 CITED2Q99967 270 aaPredicted RBP8.91□□□□□ -0.98
VPS4A-201ENST00000254950 H7C1H1 209 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 C1orf159Q96HA4 380 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 VAMP8Q9BV40 100 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 C1QTNF4Q9BXJ3 329 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 TMEM191AQ9H0A3 160 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 INSP01308 110 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 PPBPP02775 128 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 SMIM6P0DI80 62 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 SPINK13Q1W4C9 94 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 MYOZ3Q8TDC0 251 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 K7EN84 100 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 APOHP02749 345 aaPredicted RBP8.9□□□□□ -0.98
VPS4A-201ENST00000254950 PSMB8P28062 276 aa8.9□□□□□ -0.98
VPS4A-201ENST00000254950 SPAG8Q99932 426 aaPredicted RBP8.9□□□□□ -0.98
VPS4A-201ENST00000254950 ZMAT5Q9UDW3 170 aaKnown RBP8.9□□□□□ -0.98
VPS4A-201ENST00000254950 A0A087X0K7 114 aa8.9□□□□□ -0.99
VPS4A-201ENST00000254950 LEPROTL1O95214 131 aa8.9□□□□□ -0.99
VPS4A-201ENST00000254950 AMBPP02760 352 aa8.9□□□□□ -0.99
VPS4A-201ENST00000254950 C10orf99Q6UWK7 81 aa8.9□□□□□ -0.99
VPS4A-201ENST00000254950 ZFAND3Q9H8U3 227 aa8.9□□□□□ -0.99
VPS4A-201ENST00000254950 RNASE1P07998 156 aaKnown RBP8.89□□□□□ -0.99
VPS4A-201ENST00000254950 RPL35AP18077 110 aaKnown RBP8.89□□□□□ -0.99
VPS4A-201ENST00000254950 CRIP2P52943 208 aaPredicted RBP8.89□□□□□ -0.99
VPS4A-201ENST00000254950 MRGPRG-AS1Q2M3A8 158 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 Q6ZN92 141 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 OR10AG1Q8NH19 301 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 TACC2O95359 2948 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 F6UB75 175 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 BTF3P20290 206 aaKnown RBP8.89□□□□□ -0.99
VPS4A-201ENST00000254950 KLF12Q9Y4X4 402 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 DSCAML1Q8TD84 2053 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 DMXL1Q9Y485 3027 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 IGLV1-40P01703 118 aa8.89□□□□□ -0.99
VPS4A-201ENST00000254950 MCRIP2Q9BUT9 160 aaKnown RBP8.89□□□□□ -0.99
VPS4A-201ENST00000254950 MYCNOSP40205 109 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 CDKN1BP46527 198 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 HILS1P60008 231 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 FOXI2Q6ZQN5 318 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 KIR2DL4Q99706 377 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 C7orf71A4D174 169 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 KNCNA6PVL3 124 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 NPIPB6E9PJ23 425 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 ARMS2P0C7Q2 107 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 FOSL1P15407 271 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 PRO1933Q9H354 126 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 FN1P02751 2386 aaKnown RBP8.88□□□□□ -0.99
VPS4A-201ENST00000254950 CD28P10747 220 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 HOXA5P20719 270 aa8.88□□□□□ -0.99
VPS4A-201ENST00000254950 ZNF415Q09FC8 603 aa8.87□□□□□ -0.99
VPS4A-201ENST00000254950 IGSF10Q6WRI0 2623 aa8.87□□□□□ -0.99
VPS4A-201ENST00000254950 NUDT3O95989 172 aa8.87□□□□□ -0.99
VPS4A-201ENST00000254950 TYMSP04818 313 aa8.87□□□□□ -0.99
VPS4A-201ENST00000254950 ZZEF1O43149 2961 aa8.87□□□□□ -0.99
VPS4A-201ENST00000254950 CENPEQ02224 2701 aa8.87□□□□□ -0.99
VPS4A-201ENST00000254950 IGF2BP2-AS1Q96M15 143 aa8.87□□□□□ -0.99
VPS4A-201ENST00000254950 TRGV2A0A075B6R0 118 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 SERF1AO75920 110 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 EMP1P54849 157 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 SMR3AQ99954 134 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 XCL2Q9UBD3 114 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 SORL1Q92673 2214 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 SMIM27A0A1W2PRY6 76 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 PRAC2D3DTV9 90 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 RCHY1Q96PM5 261 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 LGALS9O00182 355 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 BATFQ16520 125 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 DLX4Q92988 240 aaPredicted RBP8.86□□□□□ -0.99
VPS4A-201ENST00000254950 DEFA6Q01524 100 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 LINC01006Q8NI28 216 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 TNFRSF18Q9Y5U5 241 aa8.86□□□□□ -0.99
VPS4A-201ENST00000254950 ZNF580Q9UK33 172 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 TRAV25A0A0B4J276 109 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 ANXA2RQ3ZCQ2 193 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 OR10J3Q5JRS4 329 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 PRR31Q5SQ13 230 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 TRAV12-2A0A075B6T6 113 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 IGHV1OR15-1A0A075B7D0 117 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 SMAGPQ0VAQ4 97 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 TMEM61Q8N0U2 210 aa8.85□□□□□ -0.99
VPS4A-201ENST00000254950 DPH3P1Q9H4G8 78 aa8.84□□□□□ -0.99
VPS4A-201ENST00000254950 TET2Q6N021 2002 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-201ENST00000254950 TRBV6-1A0A0K0K1D8 114 aa8.84□□□□□ -0.99
VPS4A-201ENST00000254950 TMEM213A2RRL7 107 aa8.84□□□□□ -0.99
VPS4A-201ENST00000254950 BRI3O95415 125 aa8.84□□□□□ -0.99
VPS4A-201ENST00000254950 C9orf47Q6ZRZ4 202 aa8.84□□□□□ -0.99
VPS4A-201ENST00000254950 NXT2Q9NPJ8 142 aaKnown RBP8.84□□□□□ -0.99
VPS4A-201ENST00000254950 A8MWP6 167 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 AMN1Q8IY45 258 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 D6R8Y8 96 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms