RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 PPIFP30405 207 aaKnown RBP10.16□□□□□ -0.78
USP40-201ENST00000251722 TDRG1Q3Y452 100 aa10.16□□□□□ -0.78
USP40-201ENST00000251722 WDR81Q562E7 1941 aa10.15□□□□□ -0.78
USP40-201ENST00000251722 UBE2E2Q96LR5 201 aa10.15□□□□□ -0.78
USP40-201ENST00000251722 TRBV19A0A075B6N1 114 aa10.15□□□□□ -0.78
USP40-201ENST00000251722 C6orf226Q5I0X4 101 aa10.15□□□□□ -0.78
USP40-201ENST00000251722 PRSS46E5RG02 174 aa10.15□□□□□ -0.79
USP40-201ENST00000251722 U3KQE9 123 aa10.15□□□□□ -0.79
USP40-201ENST00000251722 D6R8Y8 96 aa10.14□□□□□ -0.79
USP40-201ENST00000251722 CDK2AP2O75956 126 aa10.14□□□□□ -0.79
USP40-201ENST00000251722 WDR86Q86TI4 376 aa10.14□□□□□ -0.79
USP40-201ENST00000251722 C10orf105Q8TEF2 133 aa10.14□□□□□ -0.79
USP40-201ENST00000251722 KLF5Q13887 457 aaPredicted RBP10.14□□□□□ -0.79
USP40-201ENST00000251722 DKK1O94907 266 aa10.14□□□□□ -0.79
USP40-201ENST00000251722 IGKV1-6A0A0C4DH72 117 aa10.14□□□□□ -0.79
USP40-201ENST00000251722 K7ERJ3 54 aa10.14□□□□□ -0.79
USP40-201ENST00000251722 CACNA1EQ15878 2313 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 ODF1Q14990 250 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 UBL5Q9BZL1 73 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 LSM4Q9Y4Z0 139 aaKnown RBP10.13□□□□□ -0.79
USP40-201ENST00000251722 C3orf22Q8N5N4 141 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 NPBQ8NG41 125 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 TPRP12270 2363 aaKnown RBP10.13□□□□□ -0.79
USP40-201ENST00000251722 FAM240AA0A1B0GVK7 77 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 SPRY4Q9C004 299 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 HIGD1BQ9P298 99 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 RBAKDNA6NC62 111 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 K7EM74 188 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 FGF6P10767 208 aa10.13□□□□□ -0.79
USP40-201ENST00000251722 I3L3M4 83 aa10.12□□□□□ -0.79
USP40-201ENST00000251722 LEPROTO15243 131 aa10.12□□□□□ -0.79
USP40-201ENST00000251722 KRTAP27-1Q3LI81 207 aa10.12□□□□□ -0.79
USP40-201ENST00000251722 KIF26BQ2KJY2 2108 aa10.12□□□□□ -0.79
USP40-201ENST00000251722 A0A1B0GX51 115 aa10.12□□□□□ -0.79
USP40-201ENST00000251722 DEFB130BP0DP73 79 aa10.12□□□□□ -0.79
USP40-201ENST00000251722 DEFB130AP0DP74 79 aa10.12□□□□□ -0.79
USP40-201ENST00000251722 LHBP01229 141 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 ARMS2P0C7Q2 107 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 DEFB112Q30KQ8 113 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 PRORYQ9H606 182 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 NCR2O95944 276 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 MT-ATP8P03928 68 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 Q6ZSR3 168 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 FAM231DQ6ZW35 169 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 IGFBPL1Q8WX77 278 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 C1orf147Q96MC9 270 aaPredicted RBP10.11□□□□□ -0.79
USP40-201ENST00000251722 TRAV25A0A0B4J276 109 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 ZNF561-AS1K7EIQ3 104 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 CARD19Q96LW7 228 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 HELZP42694 1942 aaKnown RBP10.11□□□□□ -0.79
USP40-201ENST00000251722 A0A0B4J2C4 111 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 HERVK_113P63121 156 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 C14orf178Q8N769 122 aaPredicted RBP10.11□□□□□ -0.79
USP40-201ENST00000251722 HS3ST6Q96QI5 342 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 CACNA1IQ9P0X4 2223 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 FAM186AA6NE01 2351 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 CENPVL3A0A0U1RRI6 287 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 ANAPC1Q9H1A4 1944 aa10.11□□□□□ -0.79
USP40-201ENST00000251722 DNAJC13O75165 2243 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 NDUFA7O95182 113 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 FXYD7P58549 80 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 IL17DQ8TAD2 202 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 Q8TAT8 98 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 G3V318 75 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 IGHV3-53P01767 116 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 SEC61GP60059 68 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 RP1P56715 2156 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 IGKV3D-20A0A0C4DH25 116 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 XCL2Q9UBD3 114 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 SMIM27A0A1W2PRY6 76 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 CCL24O00175 119 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 ZNF134P52741 427 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 C1orf159Q96HA4 380 aa10.1□□□□□ -0.79
USP40-201ENST00000251722 A0A0G2JRQ6 117 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 MYCNOSP40205 109 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 ADORA2A-AS1P86434 159 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 PRSS57Q6UWY2 283 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 TIMM21Q9BVV7 248 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 FREM3P0C091 2139 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 PAX4O43316 350 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 CXCL5P42830 114 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 WIPF2Q8TF74 440 aaPredicted RBP10.09□□□□□ -0.79
USP40-201ENST00000251722 Q6ZRM9 215 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 ZNF503-AS2A6NEH8 195 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 RHOHQ15669 191 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 SHISA2Q6UWI4 295 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 ZNF493Q6ZR52 646 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 PRO3102Q9H379 93 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 ASXL3Q9C0F0 2248 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 PI4KAP42356 2102 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 K7EMI3 77 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 PAX9P55771 341 aa10.09□□□□□ -0.79
USP40-201ENST00000251722 LINC00479Q96M42 142 aa10.08□□□□□ -0.8
USP40-201ENST00000251722 V9GYV3 84 aa10.08□□□□□ -0.8
USP40-201ENST00000251722 INSL3P51460 131 aa10.08□□□□□ -0.8
USP40-201ENST00000251722 IGHV3-73A0A0B4J1V6 119 aa10.08□□□□□ -0.8
USP40-201ENST00000251722 WT1P19544 449 aaPredicted RBP10.08□□□□□ -0.8
USP40-201ENST00000251722 VWC2Q2TAL6 325 aa10.08□□□□□ -0.8
USP40-201ENST00000251722 Q8N8P6 123 aa10.08□□□□□ -0.8
USP40-201ENST00000251722 MAPK1IP1LQ8NDC0 245 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms