RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 HOXA3O43365 443 aaPredicted RBP17.39■□□□□ 0.38
HOXD9-201ENST00000249499 ORM1P02763 201 aa17.39■□□□□ 0.38
HOXD9-201ENST00000249499 NIT1Q86X76 327 aa17.39■□□□□ 0.38
HOXD9-201ENST00000249499 ZNF738Q8NE65 137 aa17.39■□□□□ 0.38
HOXD9-201ENST00000249499 CREBBPQ92793 2442 aa17.39■□□□□ 0.37
HOXD9-201ENST00000249499 RAB4AP20338 218 aa17.39■□□□□ 0.37
HOXD9-201ENST00000249499 TM4SF20Q53R12 229 aa17.38■□□□□ 0.37
HOXD9-201ENST00000249499 RNASEKQ6P5S7 137 aaKnown RBP17.38■□□□□ 0.37
HOXD9-201ENST00000249499 ZNF575Q86XF7 245 aa17.38■□□□□ 0.37
HOXD9-201ENST00000249499 Q8N2B8 174 aa17.38■□□□□ 0.37
HOXD9-201ENST00000249499 C20orf173Q96LM9 149 aa17.38■□□□□ 0.37
HOXD9-201ENST00000249499 OTOGQ6ZRI0 2925 aa17.38■□□□□ 0.37
HOXD9-201ENST00000249499 CELSR1Q9NYQ6 3014 aa17.37■□□□□ 0.37
HOXD9-201ENST00000249499 TRBV7-9A0A0J9YWB2 115 aa17.37■□□□□ 0.37
HOXD9-201ENST00000249499 TEX43Q6ZNM6 134 aa17.37■□□□□ 0.37
HOXD9-201ENST00000249499 TMEM86BQ8N661 226 aa17.37■□□□□ 0.37
HOXD9-201ENST00000249499 OR10J6PQ8NGY7 276 aa17.37■□□□□ 0.37
HOXD9-201ENST00000249499 LGALS1P09382 135 aaKnown RBP17.36■□□□□ 0.37
HOXD9-201ENST00000249499 NTF3P20783 257 aa17.36■□□□□ 0.37
HOXD9-201ENST00000249499 KRTDAPP60985 99 aa17.36■□□□□ 0.37
HOXD9-201ENST00000249499 FAM104BQ5XKR9 115 aa17.36■□□□□ 0.37
HOXD9-201ENST00000249499 FAM19A2Q8N3H0 131 aa17.36■□□□□ 0.37
HOXD9-201ENST00000249499 URB1-AS1Q96HZ7 61 aa17.36■□□□□ 0.37
HOXD9-201ENST00000249499 UBE2E2Q96LR5 201 aa17.36■□□□□ 0.37
HOXD9-201ENST00000249499 M0R2Z0 102 aa17.35■□□□□ 0.37
HOXD9-201ENST00000249499 LINC00614P0C842 121 aa17.35■□□□□ 0.37
HOXD9-201ENST00000249499 REC114Q7Z4M0 266 aa17.35■□□□□ 0.37
HOXD9-201ENST00000249499 U3KQK5 164 aa17.35■□□□□ 0.37
HOXD9-201ENST00000249499 RPLP1P05386 114 aaKnown RBP17.35■□□□□ 0.37
HOXD9-201ENST00000249499 CD33P20138 364 aa17.35■□□□□ 0.37
HOXD9-201ENST00000249499 LGALS9O00182 355 aa17.34■□□□□ 0.37
HOXD9-201ENST00000249499 KIR2DL5BA0A0G2JN68 375 aa17.33■□□□□ 0.37
HOXD9-201ENST00000249499 KIR2DL5BA0A0G2JPC4 375 aa17.33■□□□□ 0.37
HOXD9-201ENST00000249499 TMEM213A2RRL7 107 aa17.33■□□□□ 0.37
HOXD9-201ENST00000249499 RPL11P62913 178 aaKnown RBP17.33■□□□□ 0.37
HOXD9-201ENST00000249499 C10orf99Q6UWK7 81 aa17.33■□□□□ 0.37
HOXD9-201ENST00000249499 KIR2DL5AQ8N109 375 aa17.33■□□□□ 0.37
HOXD9-201ENST00000249499 TMEM191AQ9H0A3 160 aa17.33■□□□□ 0.37
HOXD9-201ENST00000249499 ZNF469Q96JG9 3925 aaPredicted RBP17.33■□□□□ 0.36
HOXD9-201ENST00000249499 IGKV3D-20A0A0C4DH25 116 aa17.33■□□□□ 0.36
HOXD9-201ENST00000249499 ID1P41134 155 aa17.33■□□□□ 0.36
HOXD9-201ENST00000249499 FAM181BA6NEQ2 426 aa17.32■□□□□ 0.36
HOXD9-201ENST00000249499 OR5AL1P0C617 328 aa17.32■□□□□ 0.36
HOXD9-201ENST00000249499 C3orf79P0CE67 100 aa17.32■□□□□ 0.36
HOXD9-201ENST00000249499 TWIST1Q15672 202 aa17.32■□□□□ 0.36
HOXD9-201ENST00000249499 Q8N976 141 aa17.32■□□□□ 0.36
HOXD9-201ENST00000249499 RNF114Q9Y508 228 aa17.32■□□□□ 0.36
HOXD9-201ENST00000249499 FAM19A4Q96LR4 140 aa17.31■□□□□ 0.36
HOXD9-201ENST00000249499 PRR31Q5SQ13 230 aa17.31■□□□□ 0.36
HOXD9-201ENST00000249499 APRG1Q8IVJ8 170 aa17.31■□□□□ 0.36
HOXD9-201ENST00000249499 ORMDL3Q8N138 153 aa17.31■□□□□ 0.36
HOXD9-201ENST00000249499 OR8A1Q8NGG7 326 aa17.31■□□□□ 0.36
HOXD9-201ENST00000249499 NDUFAF3Q9BU61 184 aa17.31■□□□□ 0.36
HOXD9-201ENST00000249499 VAMP8Q9BV40 100 aa17.3■□□□□ 0.36
HOXD9-201ENST00000249499 C11orf21Q9P2W6 132 aa17.3■□□□□ 0.36
HOXD9-201ENST00000249499 ZANQ9Y493 2812 aa17.3■□□□□ 0.36
HOXD9-201ENST00000249499 ZFAND2AQ8N6M9 145 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 WFDC11Q8NEX6 87 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 DCANP1Q8TF63 244 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 C14orf144Q96I85 54 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 ZFHX3Q15911 3703 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 TRAV21A0A0B4J279 112 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 AMN1Q8IY45 258 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 C20orf144Q9BQM9 153 aa17.29■□□□□ 0.36
HOXD9-201ENST00000249499 IGHV1-24A0A0C4DH33 117 aa17.28■□□□□ 0.36
HOXD9-201ENST00000249499 PPBPP02775 128 aa17.28■□□□□ 0.36
HOXD9-201ENST00000249499 MRPL51Q4U2R6 128 aaKnown RBP17.28■□□□□ 0.36
HOXD9-201ENST00000249499 BTF3P20290 206 aaKnown RBP17.27■□□□□ 0.36
HOXD9-201ENST00000249499 ITPR3Q14573 2671 aa17.27■□□□□ 0.36
HOXD9-201ENST00000249499 IGHV4-4A0A075B6R2 117 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 C2orf70A6NJV1 201 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 D6R8Y8 96 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 SNAI2O43623 268 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 CACNG7P62955 275 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 PMCHL1Q16048 86 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 PRELID3AQ96N28 172 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 AP5S1Q9NUS5 200 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 LAMTOR2Q9Y2Q5 125 aa17.27■□□□□ 0.35
HOXD9-201ENST00000249499 M0QZ24 198 aa17.25■□□□□ 0.35
HOXD9-201ENST00000249499 IGHV4OR15-8A0A075B7B6 117 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 A0A087WW49 117 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 CRXO43186 299 aaPredicted RBP17.24■□□□□ 0.35
HOXD9-201ENST00000249499 PRR9Q5T870 116 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 EBLN2Q6P2I7 272 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 LEPROTL1O95214 131 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 FA2HQ7L5A8 372 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 PRSS3P2Q8NHM4 247 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 FOXC2Q99958 501 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 TMEM70Q9BUB7 260 aa17.24■□□□□ 0.35
HOXD9-201ENST00000249499 MUC21A0A0G2JKD1 596 aa17.23■□□□□ 0.35
HOXD9-201ENST00000249499 MUC21A0A140T8X8 626 aa17.23■□□□□ 0.35
HOXD9-201ENST00000249499 HOXD3P31249 432 aaPredicted RBP17.23■□□□□ 0.35
HOXD9-201ENST00000249499 CKS2P33552 79 aa17.23■□□□□ 0.35
HOXD9-201ENST00000249499 MUC21Q5SSG8 566 aa17.23■□□□□ 0.35
HOXD9-201ENST00000249499 IGKV3-7A0A075B6H7 116 aa17.22■□□□□ 0.35
HOXD9-201ENST00000249499 MED14OSP0DP75 135 aa17.22■□□□□ 0.35
HOXD9-201ENST00000249499 SYNJ2BPP57105 145 aa17.22■□□□□ 0.35
HOXD9-201ENST00000249499 RNF185Q96GF1 192 aa17.22■□□□□ 0.35
HOXD9-201ENST00000249499 ODF3Q96PU9 254 aa17.22■□□□□ 0.35
HOXD9-201ENST00000249499 MS4A6AQ9H2W1 248 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms