RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 AKAP6Q13023 2319 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 ZNF48Q96MX3 618 aaPredicted RBP9.57□□□□□ -0.88
NUP88-201ENST00000225696 TMEM160Q9NX00 188 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 IGHV3-49A0A0A0MS15 119 aa9.56□□□□□ -0.88
NUP88-201ENST00000225696 TEX48A0A1B0GUV7 120 aa9.56□□□□□ -0.88
NUP88-201ENST00000225696 ODF3BA8MYP8 253 aa9.56□□□□□ -0.88
NUP88-201ENST00000225696 TMEM190Q8WZ59 177 aa9.56□□□□□ -0.88
NUP88-201ENST00000225696 NHP2Q9NX24 153 aaKnown RBP9.56□□□□□ -0.88
NUP88-201ENST00000225696 MRPL35Q9NZE8 188 aaKnown RBP9.56□□□□□ -0.88
NUP88-201ENST00000225696 SPRY2O43597 315 aa9.56□□□□□ -0.88
NUP88-201ENST00000225696 GOSR1O95249 250 aa9.56□□□□□ -0.88
NUP88-201ENST00000225696 SMIM17P0DL12 118 aa9.55□□□□□ -0.88
NUP88-201ENST00000225696 RPL24P83731 157 aaKnown RBP9.55□□□□□ -0.88
NUP88-201ENST00000225696 CDSNQ15517 529 aa9.55□□□□□ -0.88
NUP88-201ENST00000225696 PIFOQ8TCI5 191 aa9.55□□□□□ -0.88
NUP88-201ENST00000225696 IGHV7-81A0A0B4J1V7 117 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 EFNA4P52798 201 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 LINC01559Q495D7 138 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 OR5A1Q8NGJ0 315 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 AGPAT4-IT1Q9H0P7 198 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 NXT2Q9NPJ8 142 aaKnown RBP9.54□□□□□ -0.88
NUP88-201ENST00000225696 CLEC3BP05452 202 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 Q8N6K4 173 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 NRACQ8N912 160 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 HIGD1BQ9P298 99 aa9.54□□□□□ -0.88
NUP88-201ENST00000225696 PTPRQQ9UMZ3 2332 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 CLPSL1A2RUU4 121 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 FAM90A27PA6NNH2 459 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 BUB3O43684 328 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 DPM2O94777 84 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 C15orf32Q32M92 178 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 S100A7AQ86SG5 101 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 CEND1Q8N111 149 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 Q8N8P6 123 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 ZFAND3Q9H8U3 227 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 IGHV7-4-1A0A0J9YVY3 117 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 LINC01548A6NM66 108 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 PRTN3P24158 256 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 CEACAM3P40198 252 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 WFDC2Q14508 124 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 VMO1Q7Z5L0 202 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 MTURNQ8N3F0 131 aa9.53□□□□□ -0.88
NUP88-201ENST00000225696 TRAV8-2A0A0B4J237 113 aa9.52□□□□□ -0.89
NUP88-201ENST00000225696 SRSF2Q01130 221 aaKnown RBP9.52□□□□□ -0.89
NUP88-201ENST00000225696 TM2D2Q9BX73 214 aa9.52□□□□□ -0.89
NUP88-201ENST00000225696 UFC1Q9Y3C8 167 aa9.52□□□□□ -0.89
NUP88-201ENST00000225696 MSRB2Q9Y3D2 182 aa9.52□□□□□ -0.89
NUP88-201ENST00000225696 IGF1P05019 195 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 TMEM11P17152 192 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 ZFP36P26651 326 aaKnown RBP9.51□□□□□ -0.89
NUP88-201ENST00000225696 FOXC1Q12948 553 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 ECSCRQ19T08 205 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 AMTNQ6UX39 209 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 LCNL1Q6ZST4 164 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 Q8N9W7 124 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 ZNF502Q8TBZ5 544 aa9.51□□□□□ -0.89
NUP88-201ENST00000225696 IGLL5B9A064 214 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 G3V318 75 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 PRR9Q5T870 116 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 CCDC140Q96MF4 163 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 MUC6Q6W4X9 2439 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 E9PLD3 99 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 H3BMG7 143 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 LAGE3Q14657 143 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 CLEC19AQ6UXS0 136 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 SH2D6Q7Z4S9 175 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 KLK15Q9H2R5 256 aa9.5□□□□□ -0.89
NUP88-201ENST00000225696 IGF2RP11717 2491 aa9.49□□□□□ -0.89
NUP88-201ENST00000225696 J3KRW8 73 aa9.49□□□□□ -0.89
NUP88-201ENST00000225696 ATP5LO75964 103 aa9.49□□□□□ -0.89
NUP88-201ENST00000225696 DEFB1P60022 68 aa9.49□□□□□ -0.89
NUP88-201ENST00000225696 GTSF1LQ9H1H1 148 aa9.49□□□□□ -0.89
NUP88-201ENST00000225696 M0R1W7 72 aa9.48□□□□□ -0.89
NUP88-201ENST00000225696 ATP6V0E1O15342 81 aa9.48□□□□□ -0.89
NUP88-201ENST00000225696 C12orf74Q32Q52 190 aa9.48□□□□□ -0.89
NUP88-201ENST00000225696 A0A087WX48 190 aa9.48□□□□□ -0.89
NUP88-201ENST00000225696 H3BVH4 76 aa9.48□□□□□ -0.89
NUP88-201ENST00000225696 FOXI2Q6ZQN5 318 aa9.48□□□□□ -0.89
NUP88-201ENST00000225696 MYOZ3Q8TDC0 251 aa9.48□□□□□ -0.89
NUP88-201ENST00000225696 SPANXB1Q9NS25 103 aaPredicted RBP9.48□□□□□ -0.89
NUP88-201ENST00000225696 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.47□□□□□ -0.89
NUP88-201ENST00000225696 UCNP55089 124 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 EBI3Q14213 229 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 C8orf86Q6ZUL3 223 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 AJUBAQ96IF1 538 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 VKORC1Q9BQB6 163 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 SMPXQ9UHP9 88 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 COL6A6A6NMZ7 2263 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 RBAKDNA6NC62 111 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 INSL3P51460 131 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 SPANXN1Q5VSR9 72 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 ZNF479Q96JC4 524 aa9.47□□□□□ -0.89
NUP88-201ENST00000225696 AZU1P20160 251 aa9.46□□□□□ -0.89
NUP88-201ENST00000225696 ETDBQ3ZM63 59 aa9.46□□□□□ -0.89
NUP88-201ENST00000225696 TMEM78Q5T7P6 136 aa9.46□□□□□ -0.89
NUP88-201ENST00000225696 DEFB104AQ8WTQ1 72 aa9.46□□□□□ -0.89
NUP88-201ENST00000225696 HIST1H4GQ99525 98 aa9.46□□□□□ -0.89
NUP88-201ENST00000225696 TSSC4Q9Y5U2 329 aaPredicted RBP9.46□□□□□ -0.89
NUP88-201ENST00000225696 SPTAN1Q13813 2472 aaKnown RBP9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms