RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 RIGQ13278 110 aa14.14□□□□□ -0.15
CLN3-263ENST00000637871 SERF1AO75920 110 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 GZMBP10144 247 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 ARL3P36405 182 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 LY6EQ16553 131 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 LCN12Q6JVE5 192 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 BORCS7Q96B45 105 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 TP53TG3Q9ULZ0 132 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 JMJD1CQ15652 2540 aa14.13□□□□□ -0.15
CLN3-263ENST00000637871 A0A1W2PS18 150 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 SRIP30626 198 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 TCF24Q7RTU0 167 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 GATD1Q8NB37 220 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 GTSF1Q8WW33 167 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 PRR25Q96S07 402 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 ESM1Q9NQ30 184 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 IGLV1-40P01703 118 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 IGHV4-59P01825 116 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 PKIAP61925 76 aa14.12□□□□□ -0.15
CLN3-263ENST00000637871 NOL4LQ96MY1 436 aaPredicted RBP14.12□□□□□ -0.15
CLN3-263ENST00000637871 A0A1B0GUT8 65 aa14.11□□□□□ -0.15
CLN3-263ENST00000637871 HOXA3O43365 443 aaPredicted RBP14.11□□□□□ -0.15
CLN3-263ENST00000637871 SLAQ13239 276 aa14.11□□□□□ -0.15
CLN3-263ENST00000637871 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.11□□□□□ -0.15
CLN3-263ENST00000637871 PGLYRP4Q96LB8 373 aa14.11□□□□□ -0.15
CLN3-263ENST00000637871 SAMD10Q9BYL1 202 aa14.11□□□□□ -0.15
CLN3-263ENST00000637871 PPP1R14DQ9NXH3 145 aa14.11□□□□□ -0.15
CLN3-263ENST00000637871 TSTD3H0UI37 97 aa14.1□□□□□ -0.15
CLN3-263ENST00000637871 KCNS1Q96KK3 526 aa14.1□□□□□ -0.15
CLN3-263ENST00000637871 NUPR1O60356 82 aa14.09□□□□□ -0.15
CLN3-263ENST00000637871 CAMPP49913 170 aa14.09□□□□□ -0.15
CLN3-263ENST00000637871 KIAA1644Q3SXP7 199 aa14.09□□□□□ -0.15
CLN3-263ENST00000637871 Q6YL49 198 aa14.09□□□□□ -0.15
CLN3-263ENST00000637871 ALKBH7Q9BT30 221 aaPredicted RBP14.09□□□□□ -0.15
CLN3-263ENST00000637871 PRDM13Q9H4Q3 707 aa14.09□□□□□ -0.15
CLN3-263ENST00000637871 IGHV3-35A0A0C4DH35 117 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 TMEM189A5PLL7 270 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 DNAJC9-AS1A6NH13 148 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 IGHG4P01861 327 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 GPX1P07203 203 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 CRIP1P50238 77 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 LINC00310P59036 64 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 CFHR3Q02985 330 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 SCGB2A2Q13296 93 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 GDF5OSQ5U4N7 250 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 C18orf32Q8TCD1 76 aa14.08□□□□□ -0.15
CLN3-263ENST00000637871 PF4V1P10720 104 aa14.08□□□□□ -0.16
CLN3-263ENST00000637871 IGKV2-40A0A087WW87 121 aaPredicted RBP14.07□□□□□ -0.16
CLN3-263ENST00000637871 IGKV2D-40P01614 121 aaPredicted RBP14.07□□□□□ -0.16
CLN3-263ENST00000637871 APOHP02749 345 aaPredicted RBP14.07□□□□□ -0.16
CLN3-263ENST00000637871 RAB4AP20338 218 aa14.07□□□□□ -0.16
CLN3-263ENST00000637871 BLCAPP62952 87 aa14.07□□□□□ -0.16
CLN3-263ENST00000637871 SAMD13Q5VXD3 122 aa14.07□□□□□ -0.16
CLN3-263ENST00000637871 ZNF418Q8TF45 676 aaPredicted RBP14.07□□□□□ -0.16
CLN3-263ENST00000637871 GLMPQ8WWB7 406 aa14.07□□□□□ -0.16
CLN3-263ENST00000637871 ASCL2Q99929 193 aa14.07□□□□□ -0.16
CLN3-263ENST00000637871 LENEPQ9Y5L5 61 aa14.07□□□□□ -0.16
CLN3-263ENST00000637871 FABP5P3A8MUU1 101 aa14.06□□□□□ -0.16
CLN3-263ENST00000637871 K7EMT4 169 aa14.06□□□□□ -0.16
CLN3-263ENST00000637871 SH2D1AO60880 128 aa14.06□□□□□ -0.16
CLN3-263ENST00000637871 PRIMA1Q86XR5 153 aa14.06□□□□□ -0.16
CLN3-263ENST00000637871 C8orf49Q96NF6 230 aa14.06□□□□□ -0.16
CLN3-263ENST00000637871 LINC00527Q9UJ94 153 aa14.06□□□□□ -0.16
CLN3-263ENST00000637871 A0A1B0GUS0 222 aa14.05□□□□□ -0.16
CLN3-263ENST00000637871 ZNF324O75467 553 aaPredicted RBP14.05□□□□□ -0.16
CLN3-263ENST00000637871 HILS1P60008 231 aa14.05□□□□□ -0.16
CLN3-263ENST00000637871 OR4X2Q8NGF9 303 aa14.05□□□□□ -0.16
CLN3-263ENST00000637871 NPFFR1Q9GZQ6 430 aa14.05□□□□□ -0.16
CLN3-263ENST00000637871 NAGKQ9UJ70 344 aa14.05□□□□□ -0.16
CLN3-263ENST00000637871 TCF21O43680 179 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 SCGB1D1O95968 90 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 ZNF493Q6ZR52 646 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 C9orf47Q6ZRZ4 202 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 C8orf86Q6ZUL3 223 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 IGHV3OR16-8A0A075B7F1 116 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 LOC102724200A0A096LPH7 203 aaPredicted RBP14.04□□□□□ -0.16
CLN3-263ENST00000637871 PMCHP20382 165 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 AMTP48728 403 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 HIST1H1AQ02539 215 aaPredicted RBP14.04□□□□□ -0.16
CLN3-263ENST00000637871 FAM106AQ4KMX7 169 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 TMEM78Q5T7P6 136 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 CHCHD1Q96BP2 118 aaKnown RBP14.04□□□□□ -0.16
CLN3-263ENST00000637871 VGLL1Q99990 258 aa14.04□□□□□ -0.16
CLN3-263ENST00000637871 PEF1Q9UBV8 284 aaKnown RBP14.03□□□□□ -0.16
CLN3-263ENST00000637871 VPREB3Q9UKI3 123 aa14.03□□□□□ -0.16
CLN3-263ENST00000637871 LINC00587B1AMM8 73 aa14.02□□□□□ -0.16
CLN3-263ENST00000637871 HSBP1O75506 76 aa14.02□□□□□ -0.16
CLN3-263ENST00000637871 ZNF138P52744 262 aa14.02□□□□□ -0.16
CLN3-263ENST00000637871 GPHB5Q86YW7 130 aa14.02□□□□□ -0.16
CLN3-263ENST00000637871 C16orf92Q96LL3 132 aa14.02□□□□□ -0.16
CLN3-263ENST00000637871 TRAV8-2A0A0B4J237 113 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 F2Z2F3 143 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 OVOL1O14753 267 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 PSMB8P28062 276 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 FOXE3Q13461 319 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 CDPF1Q6NVV7 123 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 Q6ZWC4 215 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 LINC00477Q96M19 166 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 SSBP4Q9BWG4 385 aaPredicted RBP14.01□□□□□ -0.17
CLN3-263ENST00000637871 ZNF705FA8MVS1 300 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms