RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 C17orf112F2Z3M2 114 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 LYRM1O43325 122 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 IGHV3-23P01764 117 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 IGHV3-13P01766 116 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 IGHV3-7P01780 117 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 SAA1P0DJI8 122 aaPredicted RBP2.11□□□□□ -2.07
VIM-210ENST00000637053 CCL5P13501 91 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 NPPCP23582 126 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 CKS2P33552 79 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 RPL27AP46776 148 aaKnown RBP2.11□□□□□ -2.07
VIM-210ENST00000637053 CMC4P56277 68 aaPredicted RBP2.11□□□□□ -2.07
VIM-210ENST00000637053 TSPEAR-AS2P59090 65 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 GNB1P62873 340 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 MRPL51Q4U2R6 128 aaKnown RBP2.11□□□□□ -2.07
VIM-210ENST00000637053 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.11□□□□□ -2.07
VIM-210ENST00000637053 SERP2Q8N6R1 65 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 CCL4L1Q8NHW4 92 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 CMTM2Q8TAZ6 248 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 GTSF1Q8WW33 167 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 CLEC2BQ92478 149 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 AQP3Q92482 292 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 OR8B2Q96RD0 313 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 TTTY13Q9BZ97 58 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 CXCL16Q9H2A7 254 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 DEC1Q9P2X7 70 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 PHLDA3Q9Y5J5 127 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 V9GYH0 126 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 HCFC1P51610 2035 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 PIK3C2AO00443 1686 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 ROBO1Q9Y6N7 1651 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.11□□□□□ -2.071e-6■□□□□ 10.3
VIM-210ENST00000637053 ARHGEF12Q9NZN5 1544 aa2.11□□□□□ -2.07
VIM-210ENST00000637053 CFAP74Q9C0B2 1584 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 SCN11AQ9UI33 1791 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 EML6Q6ZMW3 1958 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 RNF17Q9BXT8 1623 aaKnown RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 PTPN23Q9H3S7 1636 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 EDC4Q6P2E9 1401 aaKnown RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 ANKRD50Q9ULJ7 1429 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 TET3O43151 1660 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 A0A087X002 238 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 TRAV14DV4A0A0A6YYC5 116 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 A0A1W2PQD3 144 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 PINLYPA6NC86 204 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 SRRM5B3KS81 715 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 CCL16O15467 120 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 CCKP06307 115 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 SMIM13P0DJ93 91 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 CGB3P0DN86 165 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 CGB7P0DN87 165 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 CCL3P10147 92 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 PEBP1P30086 187 aaKnown RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 MPV17P39210 176 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 FXYD7P58549 80 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 DYNLT1P63172 113 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 RBM3P98179 157 aaKnown RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 ASB16-AS1Q495Z4 193 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 RNASE13Q5GAN3 156 aaKnown RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 COMMD6Q7Z4G1 85 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 ZFAND2AQ8N6M9 145 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 CHCHD1Q96BP2 118 aaKnown RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 ZNF414Q96IQ9 312 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 SCGB3A1Q96QR1 104 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 TRGV9Q99603 122 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 C11orf1Q9H5F2 150 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 NXT2Q9NPJ8 142 aaKnown RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 C8orf17Q9NRJ1 99 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 MYH8P13535 1937 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 TCHHQ07283 1943 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 MYLKQ15746 1914 aa2.1□□□□□ -2.07
VIM-210ENST00000637053 TRPM3Q9HCF6 1732 aaPredicted RBP2.1□□□□□ -2.07
VIM-210ENST00000637053 LAMC1P11047 1609 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 KIF14Q15058 1648 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 RAPGEF6Q8TEU7 1601 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 HELZP42694 1942 aaKnown RBP2.09□□□□□ -2.07
VIM-210ENST00000637053 C1orf167Q5SNV9 1468 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 CDK12Q9NYV4 1490 aaPredicted RBP2.09□□□□□ -2.07
VIM-210ENST00000637053 SUPT6HQ7KZ85 1726 aaKnown RBP2.09□□□□□ -2.07
VIM-210ENST00000637053 MCM3APO60318 1980 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 ADGRB3O60242 1522 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 CDK13Q14004 1512 aaKnown RBP2.09□□□□□ -2.07
VIM-210ENST00000637053 IGHV7-4-1A0A0J9YVY3 117 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 J3QLW9 94 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 PIRTP0C851 137 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 IGHV3-30-3P0DP02 117 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 RNASE2P10153 161 aaKnown RBP2.09□□□□□ -2.07
VIM-210ENST00000637053 PIPP12273 146 aaPredicted RBP2.09□□□□□ -2.07
VIM-210ENST00000637053 KRTDAPP60985 99 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 ZNF816Q0VGE8 651 aaPredicted RBP2.09□□□□□ -2.07
VIM-210ENST00000637053 ZNF79Q15937 498 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 LPAL2Q16609 132 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 MPV17LQ2QL34 196 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 LUZP6Q538Z0 58 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 C2orf83Q53S99 150 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 CFAP126Q5VTH2 177 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 ZFP2Q6ZN57 461 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 TMEM136Q6ZRR5 245 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 C9orf47Q6ZRZ4 202 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 SMIM5Q71RC9 77 aa2.09□□□□□ -2.07
VIM-210ENST00000637053 PFN4Q8NHR9 129 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms