RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 RPL35P42766 123 aaKnown RBP10.91□□□□□ -0.66
LIMS3-206ENST00000631420 C9orf47Q6ZRZ4 202 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 PRNTQ86SH4 94 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 PSG8Q9UQ74 426 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 KLF12Q9Y4X4 402 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 HLA-DRB4X5D2U9 266 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 DNAH3Q8TD57 4116 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 MGAM2Q2M2H8 2515 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 SERTM2A0A1B0GWG4 89 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 RBMY1BA6NDE4 496 aaKnown RBP10.9□□□□□ -0.66
LIMS3-206ENST00000631420 RBMY1EA6NEQ0 496 aaKnown RBP10.9□□□□□ -0.66
LIMS3-206ENST00000631420 K7EQM0 130 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 NDUFS6O75380 124 aaKnown RBP10.9□□□□□ -0.66
LIMS3-206ENST00000631420 PRB2P02812 416 aaPredicted RBP10.9□□□□□ -0.66
LIMS3-206ENST00000631420 RBMY1DP0C7P1 496 aaKnown RBP10.9□□□□□ -0.66
LIMS3-206ENST00000631420 FLI1Q01543 452 aaPredicted RBP10.9□□□□□ -0.66
LIMS3-206ENST00000631420 TMEM183BQ1AE95 376 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 ZNF674Q2M3X9 581 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 UQCC3Q6UW78 93 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 TMEM75Q8N9X5 138 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 TVP23CQ96ET8 276 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 PARLQ9H300 379 aa10.9□□□□□ -0.66
LIMS3-206ENST00000631420 SFTA3P0C7M3 94 aa10.9□□□□□ -0.67
LIMS3-206ENST00000631420 UBE2G1P62253 170 aa10.9□□□□□ -0.67
LIMS3-206ENST00000631420 TMEM78Q5T7P6 136 aa10.9□□□□□ -0.67
LIMS3-206ENST00000631420 STHQ8IWL8 128 aa10.9□□□□□ -0.67
LIMS3-206ENST00000631420 LINC00477Q96M19 166 aa10.9□□□□□ -0.67
LIMS3-206ENST00000631420 ZNF492Q9P255 531 aa10.9□□□□□ -0.67
LIMS3-206ENST00000631420 ZMAT5Q9UDW3 170 aaKnown RBP10.9□□□□□ -0.67
LIMS3-206ENST00000631420 TRBV20OR9-2A0A075B6H5 130 aa10.89□□□□□ -0.67
LIMS3-206ENST00000631420 DUSP14O95147 198 aaKnown RBP10.89□□□□□ -0.67
LIMS3-206ENST00000631420 ZNF138P52744 262 aa10.89□□□□□ -0.67
LIMS3-206ENST00000631420 KPRPQ5T749 579 aaPredicted RBP10.89□□□□□ -0.67
LIMS3-206ENST00000631420 FMC1Q96HJ9 113 aa10.89□□□□□ -0.67
LIMS3-206ENST00000631420 AGRNO00468 2067 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 TMEM218A2RU14 115 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 PGPEP1LA6NFU8 196 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 RPL35AP18077 110 aaKnown RBP10.88□□□□□ -0.67
LIMS3-206ENST00000631420 FXYD7P58549 80 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 NDUFA5Q16718 116 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 AMTNQ6UX39 209 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 Q86TA4 180 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 TRPT1Q86TN4 253 aaKnown RBP10.88□□□□□ -0.67
LIMS3-206ENST00000631420 IGF2BP2-AS1Q96M15 143 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 SRD5A3Q9H8P0 318 aa10.88□□□□□ -0.67
LIMS3-206ENST00000631420 J3KRW8 73 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 TAS2R60P59551 318 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 KIR3DS1Q14943 382 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 CENPWQ5EE01 88 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 SOHLH1Q5JUK2 328 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 BAGE2Q86Y30 109 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 NHLRC2Q8NBF2 726 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 FAM19A4Q96LR4 140 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 C8orf49Q96NF6 230 aa10.87□□□□□ -0.67
LIMS3-206ENST00000631420 TRBV6-1A0A0K0K1D8 114 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 A8MTW9 85 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 ZNF727A8MUV8 499 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 LTAP01374 205 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 S100A9P06702 114 aaKnown RBP10.86□□□□□ -0.67
LIMS3-206ENST00000631420 ADCYAP1P18509 176 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 SMIM7Q9BQ49 75 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 AURKAIP1Q9NWT8 199 aaPredicted RBP10.86□□□□□ -0.67
LIMS3-206ENST00000631420 PPP1R14DQ9NXH3 145 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 M0R2Z0 102 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 IGLV2-8P01709 118 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 IGHV4-30-4P0DP06 118 aa10.86□□□□□ -0.67
LIMS3-206ENST00000631420 NOTCH1P46531 2555 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 FBLL1A6NHQ2 334 aaKnown RBP10.85□□□□□ -0.67
LIMS3-206ENST00000631420 GNG4P50150 75 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 SPINK13Q1W4C9 94 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 PRR9Q5T870 116 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 ZFAND2AQ8N6M9 145 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 OCC1Q8TAD7 63 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 MLST8Q9BVC4 326 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 TUBA4BQ9H853 241 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 ZFP30Q9Y2G7 519 aa10.85□□□□□ -0.67
LIMS3-206ENST00000631420 TRAV12-2A0A075B6T6 113 aa10.84□□□□□ -0.67
LIMS3-206ENST00000631420 C9JCJ5 164 aa10.84□□□□□ -0.67
LIMS3-206ENST00000631420 F8W036 122 aa10.84□□□□□ -0.67
LIMS3-206ENST00000631420 SAPCD1Q5SSQ6 148 aa10.84□□□□□ -0.67
LIMS3-206ENST00000631420 Q6ZQT7 251 aa10.84□□□□□ -0.67
LIMS3-206ENST00000631420 CLUHP3Q96NS8 147 aa10.84□□□□□ -0.67
LIMS3-206ENST00000631420 GIG44P09565 113 aaPredicted RBP10.83□□□□□ -0.68
LIMS3-206ENST00000631420 CRISP2P16562 243 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 CRIP1P50238 77 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 ZNF80P51504 273 aaPredicted RBP10.83□□□□□ -0.68
LIMS3-206ENST00000631420 TMEM241Q24JQ0 296 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 FAM74A3Q4VXF1 159 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 TMEM183AQ8IXX5 376 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 ZC2HC1AQ96GY0 325 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 ODF3Q96PU9 254 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 NDFIP1Q9BT67 221 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 LENEPQ9Y5L5 61 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 NBEAL1Q6ZS30 2694 aa10.83□□□□□ -0.68
LIMS3-206ENST00000631420 K7EIL1 84 aa10.82□□□□□ -0.68
LIMS3-206ENST00000631420 K7EN84 100 aa10.82□□□□□ -0.68
LIMS3-206ENST00000631420 CRXO43186 299 aaPredicted RBP10.82□□□□□ -0.68
LIMS3-206ENST00000631420 GPX1P07203 203 aa10.82□□□□□ -0.68
LIMS3-206ENST00000631420 LEPP41159 167 aa10.82□□□□□ -0.68
LIMS3-206ENST00000631420 CDKN1BP46527 198 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms