RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 IGHV4-28A0A0C4DH34 117 aa14.68□□□□□ -0.06
PTCD3-220ENST00000627371 DIRC3C9JPN6 131 aa14.68□□□□□ -0.06
PTCD3-220ENST00000627371 SLC25A5P05141 298 aaKnown RBP14.68□□□□□ -0.06
PTCD3-220ENST00000627371 LEPP41159 167 aa14.68□□□□□ -0.06
PTCD3-220ENST00000627371 MUC7Q8TAX7 377 aa14.68□□□□□ -0.06
PTCD3-220ENST00000627371 FAM213BQ8TBF2 198 aa14.68□□□□□ -0.06
PTCD3-220ENST00000627371 VGLL1Q99990 258 aa14.68□□□□□ -0.06
PTCD3-220ENST00000627371 SMIM9A6NGZ8 99 aa14.67□□□□□ -0.06
PTCD3-220ENST00000627371 TMEM78Q5T7P6 136 aa14.67□□□□□ -0.06
PTCD3-220ENST00000627371 FAM19A4Q96LR4 140 aa14.67□□□□□ -0.06
PTCD3-220ENST00000627371 TMPRSS5Q9H3S3 457 aa14.67□□□□□ -0.06
PTCD3-220ENST00000627371 A0A1W2PRE2 83 aa14.66□□□□□ -0.06
PTCD3-220ENST00000627371 RBMY1A1P0DJD3 496 aaKnown RBP14.66□□□□□ -0.06
PTCD3-220ENST00000627371 RBMY1CP0DJD4 496 aa14.66□□□□□ -0.06
PTCD3-220ENST00000627371 RBMY1FQ15415 496 aaKnown RBP14.66□□□□□ -0.06
PTCD3-220ENST00000627371 MBD3L1Q8WWY6 194 aa14.66□□□□□ -0.06
PTCD3-220ENST00000627371 TMEM208Q9BTX3 173 aa14.66□□□□□ -0.06
PTCD3-220ENST00000627371 GGTLC3B5MD39 225 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 DEFB4AO15263 64 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 RAB5CP51148 216 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 KIR3DS1Q14943 382 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 GFI1BQ5VTD9 330 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 TMEM256Q8N2U0 113 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 C5orf17Q8NAS9 161 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 C20orf144Q9BQM9 153 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 ZNF492Q9P255 531 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 RPH3ALQ9UNE2 315 aa14.65□□□□□ -0.06
PTCD3-220ENST00000627371 CSMD3Q7Z407 3707 aa14.64□□□□□ -0.07
PTCD3-220ENST00000627371 CRISP2P16562 243 aa14.64□□□□□ -0.07
PTCD3-220ENST00000627371 ZNF138P52744 262 aa14.64□□□□□ -0.07
PTCD3-220ENST00000627371 NKX2-5P52952 324 aaPredicted RBP14.64□□□□□ -0.07
PTCD3-220ENST00000627371 GNG5P63218 68 aa14.64□□□□□ -0.07
PTCD3-220ENST00000627371 IL17DQ8TAD2 202 aa14.64□□□□□ -0.07
PTCD3-220ENST00000627371 SFT2D1Q8WV19 159 aa14.64□□□□□ -0.07
PTCD3-220ENST00000627371 TRBV7-9A0A0J9YWB2 115 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 KLLNB2CW77 178 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 C3orf84H3BNL1 204 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 HBE1P02100 147 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 SULT1A2P50226 295 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 SUMO1P63165 101 aaKnown RBP14.63□□□□□ -0.07
PTCD3-220ENST00000627371 GOLT1AQ6ZVE7 132 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 Q8TAT8 98 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 YTHDF2Q9Y5A9 579 aaKnown RBP14.63□□□□□ -0.07
PTCD3-220ENST00000627371 STARD9Q9P2P6 4700 aa14.63□□□□□ -0.07
PTCD3-220ENST00000627371 SERTM2A0A1B0GWG4 89 aa14.62□□□□□ -0.07
PTCD3-220ENST00000627371 FAM74A7A6NL05 159 aa14.62□□□□□ -0.07
PTCD3-220ENST00000627371 J3KRW8 73 aa14.62□□□□□ -0.07
PTCD3-220ENST00000627371 NMBP08949 121 aa14.62□□□□□ -0.07
PTCD3-220ENST00000627371 H2AFB1P0C5Y9 115 aa14.62□□□□□ -0.07
PTCD3-220ENST00000627371 UBE2G2P60604 165 aa14.62□□□□□ -0.07
PTCD3-220ENST00000627371 RRN3P1Q2M238 152 aa14.62□□□□□ -0.07
PTCD3-220ENST00000627371 TCRAP04437 139 aa14.61□□□□□ -0.07
PTCD3-220ENST00000627371 ZFAND2AQ8N6M9 145 aa14.61□□□□□ -0.07
PTCD3-220ENST00000627371 LINC01587Q99440 93 aa14.61□□□□□ -0.07
PTCD3-220ENST00000627371 NKX6-2Q9C056 277 aaPredicted RBP14.61□□□□□ -0.07
PTCD3-220ENST00000627371 LENEPQ9Y5L5 61 aa14.61□□□□□ -0.07
PTCD3-220ENST00000627371 ARL2-SNX15V9GYD0 113 aa14.61□□□□□ -0.07
PTCD3-220ENST00000627371 LOC102723971A0A1B0GUV8 181 aa14.6□□□□□ -0.07
PTCD3-220ENST00000627371 C7orf71A4D174 169 aa14.6□□□□□ -0.07
PTCD3-220ENST00000627371 TMEM189A5PLL7 270 aa14.6□□□□□ -0.07
PTCD3-220ENST00000627371 H7BYZ3 331 aa14.6□□□□□ -0.07
PTCD3-220ENST00000627371 TAS2R60P59551 318 aa14.6□□□□□ -0.07
PTCD3-220ENST00000627371 EPDR1Q9UM22 224 aa14.6□□□□□ -0.07
PTCD3-220ENST00000627371 TRAV12-3A0A0B4J271 114 aa14.59□□□□□ -0.07
PTCD3-220ENST00000627371 A0A1B0GV50 99 aa14.59□□□□□ -0.07
PTCD3-220ENST00000627371 ZNF705GA8MUZ8 300 aaPredicted RBP14.59□□□□□ -0.07
PTCD3-220ENST00000627371 GPX1P07203 203 aa14.59□□□□□ -0.07
PTCD3-220ENST00000627371 BTN1A1Q13410 526 aa14.59□□□□□ -0.07
PTCD3-220ENST00000627371 C11orf45Q8TAV5 145 aa14.59□□□□□ -0.07
PTCD3-220ENST00000627371 NIPSNAP3BQ9BS92 247 aa14.59□□□□□ -0.07
PTCD3-220ENST00000627371 ATG101Q9BSB4 218 aa14.59□□□□□ -0.07
PTCD3-220ENST00000627371 TRAV8-1A0A0A6YYK1 113 aa14.58□□□□□ -0.08
PTCD3-220ENST00000627371 K7EQM0 130 aa14.58□□□□□ -0.08
PTCD3-220ENST00000627371 PRR9Q5T870 116 aa14.58□□□□□ -0.08
PTCD3-220ENST00000627371 CYB561D1Q8N8Q1 229 aa14.58□□□□□ -0.08
PTCD3-220ENST00000627371 BOLA1Q9Y3E2 137 aa14.58□□□□□ -0.08
PTCD3-220ENST00000627371 TRAV1-1A0A0B4J248 108 aa14.57□□□□□ -0.08
PTCD3-220ENST00000627371 PRM2P04554 102 aa14.57□□□□□ -0.08
PTCD3-220ENST00000627371 RNASE4P34096 147 aaKnown RBP14.57□□□□□ -0.08
PTCD3-220ENST00000627371 CASC10Q5T4H9 136 aa14.57□□□□□ -0.08
PTCD3-220ENST00000627371 ZFAND6Q6FIF0 208 aa14.57□□□□□ -0.08
PTCD3-220ENST00000627371 ZNF324O75467 553 aaPredicted RBP14.56□□□□□ -0.08
PTCD3-220ENST00000627371 IFNA7P01567 189 aa14.56□□□□□ -0.08
PTCD3-220ENST00000627371 PPT1P50897 306 aa14.56□□□□□ -0.08
PTCD3-220ENST00000627371 EMP1P54849 157 aa14.56□□□□□ -0.08
PTCD3-220ENST00000627371 NANOS2P60321 138 aaKnown RBP14.56□□□□□ -0.08
PTCD3-220ENST00000627371 CCDC28AQ8IWP9 274 aa14.56□□□□□ -0.08
PTCD3-220ENST00000627371 TMEM75Q8N9X5 138 aa14.56□□□□□ -0.08
PTCD3-220ENST00000627371 PYGO2Q9BRQ0 406 aa14.56□□□□□ -0.08
PTCD3-220ENST00000627371 CELA1Q9UNI1 258 aa14.56□□□□□ -0.08
PTCD3-220ENST00000627371 FBLL1A6NHQ2 334 aaKnown RBP14.55□□□□□ -0.08
PTCD3-220ENST00000627371 TEX46H3BTG2 121 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 PEX7O00628 323 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 PAGE4O60829 102 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 HTN1P15515 57 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 AZU1P20160 251 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 CST9LP1Q5W188 147 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 HIST1H2BAQ96A08 127 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 SGK494Q96LW2 274 aa14.55□□□□□ -0.08
PTCD3-220ENST00000627371 TCEAL7Q9BRU2 100 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms