RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TMEM256Q8N2U0 113 aa12.14□□□□□ -0.47
CPSF1-213ENST00000620219 ZNF48Q96MX3 618 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-213ENST00000620219 DNAJC9-AS1A6NH13 148 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 FOXL1Q12952 345 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 FAM209BQ5JX69 171 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 FAM162BQ5T6X4 162 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 NRN1Q9NPD7 142 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 UBE2CO00762 179 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 SLURP1P55000 103 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 PDE6HQ13956 83 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 LOC389332A0A1B0GUA5 103 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 F5H697 171 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 IGF1P05019 195 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 AMTP48728 403 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 HOXD3P31249 432 aaPredicted RBP12.13□□□□□ -0.47
CPSF1-213ENST00000620219 KRTDAPP60985 99 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 LYPD1Q8N2G4 141 aa12.13□□□□□ -0.47
CPSF1-213ENST00000620219 ELANEP08246 267 aa12.12□□□□□ -0.47
CPSF1-213ENST00000620219 JMJD8Q96S16 334 aa12.12□□□□□ -0.47
CPSF1-213ENST00000620219 FABP5P3A8MUU1 101 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 TMEM75Q8N9X5 138 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 OR1N2Q8NGR9 330 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 PEMTQ9UBM1 199 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 FXYD7P58549 80 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 TCTEX1D4Q5JR98 221 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 IGHV4OR15-8A0A075B7B6 117 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 A0A087WW49 117 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 M0R381 172 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 HLA-DQA1P01909 254 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 TMEM183AQ8IXX5 376 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 NUP35Q8NFH5 326 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 PRSS3P2Q8NHM4 247 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 PRAC2D3DTV9 90 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 C9orf139Q6ZV77 190 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 YPEL4Q96NS1 127 aa12.11□□□□□ -0.47
CPSF1-213ENST00000620219 CSMD2Q7Z408 3487 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 TSKUQ8WUA8 353 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 IGHV7-4-1A0A0J9YVY3 117 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 IZUMO1RA6ND01 250 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 HBBP68871 147 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 IQCJQ1A5X6 159 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 HIST3H2BBQ8N257 126 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 H3BUA1 57 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 SH2D1AO60880 128 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 MGPP08493 103 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 ZC2HC1AQ96GY0 325 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 NACAE9PAV3 2078 aa12.1□□□□□ -0.47
CPSF1-213ENST00000620219 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.09□□□□□ -0.47
CPSF1-213ENST00000620219 TRBV9A0A0B4J1U6 114 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 A0A1B0GUT8 65 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 SMIM17P0DL12 118 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 SAP30O75446 220 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 ZNF138P52744 262 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 ACTL10Q5JWF8 245 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 IGF2BP2-AS1Q96M15 143 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 LY96Q9Y6Y9 160 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 IGLC2P0DOY2 106 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 LINC00322Q6ZN03 302 aaPredicted RBP12.09□□□□□ -0.47
CPSF1-213ENST00000620219 INAFM1C9JVW0 142 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 IGLV2-8P01709 118 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 FAM19A2Q8N3H0 131 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 TMEM190Q8WZ59 177 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 HIST1H2BLQ99880 126 aa12.09□□□□□ -0.47
CPSF1-213ENST00000620219 SERF1AO75920 110 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 MT-ND6P03923 174 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 SMPXQ9UHP9 88 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 PHLDA3Q9Y5J5 127 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 F8W735 103 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-213ENST00000620219 LINC01619G3V211 115 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 C1orf194Q5T5A4 169 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 FA2HQ7L5A8 372 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 LGALS1P09382 135 aaKnown RBP12.08□□□□□ -0.48
CPSF1-213ENST00000620219 SMIM6P0DI80 62 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 FAM159AQ6UWV7 190 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 FER1L6-AS1Q8NA97 138 aa12.08□□□□□ -0.48
CPSF1-213ENST00000620219 COX19Q49B96 90 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 PRR25Q96S07 402 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 APCP25054 2843 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 ATRQ13535 2644 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 IGHG4P01861 327 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 RAB4AP20338 218 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 F2Z2F3 143 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 FOXE3Q13461 319 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 FOXC2Q99958 501 aa12.07□□□□□ -0.48
CPSF1-213ENST00000620219 DEFB131AP59861 70 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 C18orf65Q6ZTR6 163 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 RNF114Q9Y508 228 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 AMBPP02760 352 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 MBD6Q96DN6 1003 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 CKS2P33552 79 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 PYY3Q5JQD4 70 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 AGPAT4-IT1Q9H0P7 198 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 ZFAND3Q9H8U3 227 aa12.06□□□□□ -0.48
CPSF1-213ENST00000620219 TRAV12-3A0A0B4J271 114 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 CD5LO43866 347 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 LY6G6DO95868 133 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 LYZL1Q6UWQ5 148 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 PYGO2Q9BRQ0 406 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 H3BVH4 76 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms