RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 H3BVH4 76 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 EGR2P11161 476 aaPredicted RBP9.94□□□□□ -0.82
LIG1-221ENST00000613670 C5orf64Q2M2E5 130 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 LYPD1Q8N2G4 141 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 PRR25Q96S07 402 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 NXT2Q9NPJ8 142 aaKnown RBP9.94□□□□□ -0.82
LIG1-221ENST00000613670 METTL26Q96S19 204 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 TRAV40A0A0B4J280 105 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 NDUFS7O75251 213 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 ATP5LO75964 103 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 TNFRSF6BO95407 300 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 CHAC1Q9BUX1 264 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 A0A1B0GWB2 263 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 TGFAP01135 160 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 PAX2Q02962 417 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 LGALS9BQ3B8N2 356 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 SAMD13Q5VXD3 122 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 LGALS9CQ6DKI2 356 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 OR5A1Q8NGJ0 315 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 UBTD1Q9HAC8 227 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 PHLDA3Q9Y5J5 127 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 I3L2K1 104 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 PPBPP02775 128 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 CRYGCP07315 174 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 MYCNOSP40205 109 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 C15orf32Q32M92 178 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 IGFL2Q6UWQ7 119 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 ZNF479Q96JC4 524 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 SCGB3A1Q96QR1 104 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 IGF2RP11717 2491 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 TRAV26-2A0A0B4J265 109 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 K7EIM0 57 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 GLMPQ8WWB7 406 aa9.93□□□□□ -0.82
LIG1-221ENST00000613670 VKORC1Q9BQB6 163 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 TEX22C9J3V5 150 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 H7C2G1 150 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 APOMO95445 188 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 NDPQ00604 133 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 CSPG4Q6UVK1 2322 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 TMEM8BA6NDV4 472 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.92□□□□□ -0.82
LIG1-221ENST00000613670 Q1RN00 199 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 MUC6Q6W4X9 2439 aa9.92□□□□□ -0.82
LIG1-221ENST00000613670 INS-IGF2F8WCM5 200 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 K7EP34 96 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 SPRY2O43597 315 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 ZNF418Q8TF45 676 aaPredicted RBP9.91□□□□□ -0.82
LIG1-221ENST00000613670 PTPRQQ9UMZ3 2332 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 THBDP07204 575 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 C7orf69Q9H7B7 122 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 LINC00574Q9H8X3 128 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 MRPL16Q9NX20 251 aaKnown RBP9.91□□□□□ -0.82
LIG1-221ENST00000613670 CYSLTR1Q9Y271 337 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 TNRC6BQ9UPQ9 1833 aaKnown RBP9.91□□□□□ -0.82
LIG1-221ENST00000613670 PCSK5Q92824 1860 aa9.91□□□□□ -0.82
LIG1-221ENST00000613670 A0A1W2PPM0 123 aa9.9□□□□□ -0.82
LIG1-221ENST00000613670 IL17RELQ6ZVW7 336 aa9.9□□□□□ -0.82
LIG1-221ENST00000613670 ANKRD11Q6UB99 2663 aaPredicted RBP9.9□□□□□ -0.82
LIG1-221ENST00000613670 C3orf36Q3SXR2 165 aa9.9□□□□□ -0.82
LIG1-221ENST00000613670 AMTNQ6UX39 209 aa9.9□□□□□ -0.82
LIG1-221ENST00000613670 ADAMTSL5Q6ZMM2 481 aa9.9□□□□□ -0.82
LIG1-221ENST00000613670 CRXO43186 299 aaPredicted RBP9.9□□□□□ -0.82
LIG1-221ENST00000613670 HTN1P15515 57 aa9.9□□□□□ -0.82
LIG1-221ENST00000613670 JMJD8Q96S16 334 aa9.9□□□□□ -0.82
LIG1-221ENST00000613670 PDE6HQ13956 83 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 Q5PR19 223 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 RAXQ9Y2V3 346 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 PSMB2P49721 201 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 CRIP1P50238 77 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 EFNA4P52798 201 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 ETDBQ3ZM63 59 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 MRPL35Q9NZE8 188 aaKnown RBP9.89□□□□□ -0.83
LIG1-221ENST00000613670 CIDEAO60543 219 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 OR10J6PQ8NGY7 276 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 WFDC12Q8WWY7 111 aa9.89□□□□□ -0.83
LIG1-221ENST00000613670 FAM74A4Q5TZK3 123 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 NPIPB6E9PJ23 425 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 FXYD2P54710 66 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 EMP1P54849 157 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 LAGE3Q14657 143 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 VMO1Q7Z5L0 202 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 CSTL1Q9H114 145 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 KAAG1Q9UBP8 84 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 SORL1Q92673 2214 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 IGKV3-20P01619 116 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 IGLV1-47P01700 117 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 IGHV3-11P01762 117 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 RNF5Q99942 180 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 SRSF1Q07955 248 aaKnown RBP eCLIP9.88□□□□□ -0.834e-6■■■■□ 20.1
LIG1-221ENST00000613670 DTX2Q86UW9 622 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 DYNAPQ8N1N2 210 aa9.88□□□□□ -0.83
LIG1-221ENST00000613670 MGAQ8IWI9 3026 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 IGLV2-11P01706 119 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 LY6EQ16553 131 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 ZNF562Q6V9R5 426 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 SIGMAR1Q99720 223 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 PF4V1P10720 104 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 CD300EQ496F6 205 aaPredicted RBP9.87□□□□□ -0.83
LIG1-221ENST00000613670 TMEM170BQ5T4T1 132 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms