RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	FAM122C	Q6P4D5	195 aa		12.17	□□□□□ -0.46
SHKBP1-223	ENST00000600552	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	FAM240B	A0A1B0GVZ2	78 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	NDUFB4	O95168	129 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	IGKV2D-40	P01614	121 aa	Predicted RBP	12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	DAZ2	Q13117	558 aa	Known RBP	12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	ICAM4	Q14773	271 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	VWC2	Q2TAL6	325 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	EIF4E3	Q8N5X7	224 aa	Known RBP	12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	THAP6	Q8TBB0	222 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	ZNF503	Q96F45	646 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	LINC00477	Q96M19	166 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	FUT9	Q9Y231	359 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	KLF12	Q9Y4X4	402 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	HSPG2	P98160	4391 aa		12.16	□□□□□ -0.46
SHKBP1-223	ENST00000600552	RGS13	O14921	159 aa		12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	ATP6V1F	Q16864	119 aa		12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	ZNF680	Q8NEM1	530 aa		12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	MRPL53	Q96EL3	112 aa	Known RBP	12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552		Q9H3A6	140 aa		12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	AAMDC	Q9H7C9	122 aa		12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	TMEM14C	Q9P0S9	112 aa		12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	PRELID1	Q9Y255	219 aa		12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	MRPS16	Q9Y3D3	137 aa	Known RBP	12.15	□□□□□ -0.46
SHKBP1-223	ENST00000600552	ZNF253	O75346	499 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	MPDU1	O75352	247 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	SIX6	O95475	246 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	NHLH2	Q02577	135 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	TMEM78	Q5T7P6	136 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	MIR17HG	Q75NE6	70 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	VSIG2	Q96IQ7	327 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	VGLL1	Q99990	258 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	NPCDR1	Q9BY65	106 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	MRPL16	Q9NX20	251 aa	Known RBP	12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552	TP53TG3	Q9ULZ0	132 aa		12.14	□□□□□ -0.47
SHKBP1-223	ENST00000600552		A0A096LPF7	62 aa		12.13	□□□□□ -0.47
SHKBP1-223	ENST00000600552	ZNF324	O75467	553 aa	Predicted RBP	12.13	□□□□□ -0.47
SHKBP1-223	ENST00000600552	CDK2AP2	O75956	126 aa		12.13	□□□□□ -0.47
SHKBP1-223	ENST00000600552		Q6ZQT7	251 aa		12.13	□□□□□ -0.47
SHKBP1-223	ENST00000600552	C11orf72	Q8NBR9	251 aa		12.13	□□□□□ -0.47
SHKBP1-223	ENST00000600552	SLC25A2	Q9BXI2	301 aa		12.13	□□□□□ -0.47
SHKBP1-223	ENST00000600552	KLLN	B2CW77	178 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552		H3BNG1	76 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	PAX4	O43316	350 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	OR10J4	P0C629	311 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	KRTAP10-2	P60368	255 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	IL15RA	Q13261	267 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	LRRC37A5P	Q49AS3	106 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	PRR9	Q5T870	116 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	MZT2B	Q6NZ67	158 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	OR5C1	Q8NGR4	320 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	ARPC5L	Q9BPX5	153 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	UPK3B	Q9BT76	320 aa		12.12	□□□□□ -0.47
SHKBP1-223	ENST00000600552	LRP1B	Q9NZR2	4599 aa		12.11	□□□□□ -0.47
SHKBP1-223	ENST00000600552	PDE6H	Q13956	83 aa		12.11	□□□□□ -0.47
SHKBP1-223	ENST00000600552	OR51M1	Q9H341	326 aa		12.11	□□□□□ -0.47
SHKBP1-223	ENST00000600552	IGHV1OR15-1	A0A075B7D0	117 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	SPINK4	O60575	86 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	NBEAP1	P0C6P0	100 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	LINC00315	P59091	139 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	ANXA2R	Q3ZCQ2	193 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	C9orf47	Q6ZRZ4	202 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552		Q8TAT8	98 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	CHAC2	Q8WUX2	184 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	FAM19A4	Q96LR4	140 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	C8orf49	Q96NF6	230 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	PAXX	Q9BUH6	204 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552	CCDC32	Q9BV29	185 aa		12.1	□□□□□ -0.47
SHKBP1-223	ENST00000600552		A0A1W2PPQ1	181 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	FUS	P35637	526 aa	Known RBP eCLIP	12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	TCL1A	P56279	114 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	MUC21	Q5SSG8	566 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	ZFAND2A	Q8N6M9	145 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	FAM167A-AS1	Q96KT0	104 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	SLC25A31	Q9H0C2	315 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	SCRT2	Q9NQ03	307 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	OR5AC2	Q9NZP5	309 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	NDUFA13	Q9P0J0	144 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	ICOS	Q9Y6W8	199 aa		12.09	□□□□□ -0.47
SHKBP1-223	ENST00000600552	SIVA1	O15304	175 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552	OR7C2	O60412	319 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552	NXPH4	O95158	308 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552	CRISP2	P16562	243 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552	ENKUR	Q8TC29	256 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552	PHYHIPL	Q96FC7	376 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552	LINC00467	Q9BRT7	94 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552	ZNF492	Q9P255	531 aa		12.08	□□□□□ -0.48
SHKBP1-223	ENST00000600552		E5RGE8	158 aa		12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	PRAF2	O60831	178 aa		12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	CSN1S1	P47710	185 aa		12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	ZNF138	P52744	262 aa		12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	RAN	P62826	216 aa	Known RBP	12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	FXYD5	Q96DB9	178 aa		12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	ST6GAL2	Q96JF0	529 aa		12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	TNFRSF18	Q9Y5U5	241 aa		12.07	□□□□□ -0.48
SHKBP1-223	ENST00000600552	HHLA3	Q9XRX5	114 aa		12.06	□□□□□ -0.48
SHKBP1-223	ENST00000600552	TRGV4	A0A0C4DH28	118 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	EIF3G	O75821	320 aa	Known RBP eCLIP	12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	NMB	P08949	121 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	ZNF415	Q09FC8	603 aa		12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms