RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 YTHDF2Q9Y5A9 579 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-218ENST00000598907 HLA-DMBP28068 263 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 TFPI2P48307 235 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 RANP62826 216 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 CCDC28AQ8IWP9 274 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 IQCF2Q8IXL9 164 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 EXOC3-AS1Q8N2X6 119 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 C20orf173Q96LM9 149 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 Q9H3A6 140 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 MANBALQ9NQG1 85 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 OTORQ9NRC9 128 aa10.08□□□□□ -0.8
SHKBP1-218ENST00000598907 GGTLC3B5MD39 225 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 PAGE4O60829 102 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 ID1P41134 155 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 PSG3Q16557 428 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 IGFL4Q6B9Z1 124 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 RNF182Q8N6D2 247 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 ARL6IP6Q8N6S5 226 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 MRPL53Q96EL3 112 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 RARRES2Q99969 163 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 NKX6-2Q9C056 277 aaPredicted RBP10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 GNG13Q9P2W3 67 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 PRELID1Q9Y255 219 aa10.07□□□□□ -0.8
SHKBP1-218ENST00000598907 IGHV4-4A0A075B6R2 117 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 KIR2DL5BA0A0G2JN68 375 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 KIR2DL5BA0A0G2JPC4 375 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 PGPA6NDG6 321 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 CMC4P56277 68 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 UBE2G2P60604 165 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 SNRPD3P62318 126 aaKnown RBP10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 ICAM4Q14773 271 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 ODF3L2Q3SX64 289 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 KIR2DL5AQ8N109 375 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 KIR2DL5BQ8NHK3 375 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 FAM210AQ96ND0 272 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 C11orf68Q9H3H3 251 aaKnown RBP10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 AAMDCQ9H7C9 122 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 MAP6D1Q9H9H5 199 aa10.06□□□□□ -0.8
SHKBP1-218ENST00000598907 IGLV2-18A0A075B6J9 118 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 LOC102723971A0A1B0GUV8 181 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 M0R3E3 92 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 IFNA1P01562 189 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 ZNF688P0C7X2 276 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 BCL2P10415 239 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 TAGLN2P37802 199 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 SUMO1P63165 101 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 TXNDC17Q9BRA2 123 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 MED9Q9NWA0 146 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 VAX2Q9UIW0 290 aa10.05□□□□□ -0.8
SHKBP1-218ENST00000598907 RBFOX3A6NFN3 312 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 ZNF705FA8MVS1 300 aaPredicted RBP10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 NDUFS6O75380 124 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 ATP5G3P48201 142 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 PSMG4Q5JS54 123 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 ZNF506Q5JVG8 444 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 POM121L12Q8N7R1 296 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 OR11H2Q8NH07 326 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 RXFP4Q8TDU9 374 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 LINC00052Q96N35 136 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 TCEAL7Q9BRU2 100 aa10.04□□□□□ -0.8
SHKBP1-218ENST00000598907 LINC00862A6NCI5 91 aa10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 C11orf94C9JXX5 98 aa10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 PRAC2D3DTV9 90 aa10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 DEFB131AP59861 70 aa10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 MEF2BQ02080 365 aaPredicted RBP10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 CST9LP1Q5W188 147 aa10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 C5orf17Q8NAS9 161 aa10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 RPUSD4Q96CM3 377 aaKnown RBP10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 EPDR1Q9UM22 224 aa10.03□□□□□ -0.8
SHKBP1-218ENST00000598907 DNAH5Q8TE73 4624 aa10.02□□□□□ -0.81
SHKBP1-218ENST00000598907 DIRC3C9JPN6 131 aa10.02□□□□□ -0.81
SHKBP1-218ENST00000598907 SLC25A5P05141 298 aaKnown RBP10.02□□□□□ -0.81
SHKBP1-218ENST00000598907 ZNF738Q8NE65 137 aa10.02□□□□□ -0.81
SHKBP1-218ENST00000598907 AGRNO00468 2067 aa10.02□□□□□ -0.81
SHKBP1-218ENST00000598907 A0A0J9YX75 114 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 RAB19A4D1S5 217 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 RBAKDNA6NC62 111 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 A8MTW9 85 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 TCRAP04437 139 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 P0DMU3 169 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 FAM231AP0DMU4 169 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 FAM231CP0DMU5 169 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 CSN1S1P47710 185 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 DEFB1P60022 68 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 GNG5P63218 68 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 ZNF124Q15973 351 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 LGALS9BQ3B8N2 356 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 TOR2AQ5JU69 321 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 SOHLH1Q5JUK2 328 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 FOXI2Q6ZQN5 318 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 CMTM2Q8TAZ6 248 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 HIST1H2BAQ96A08 127 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 C11orf52Q96A22 123 aa10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 SAV1Q9H4B6 383 aaPredicted RBP10.01□□□□□ -0.81
SHKBP1-218ENST00000598907 SERTM2A0A1B0GWG4 89 aa10□□□□□ -0.81
SHKBP1-218ENST00000598907 F6UB75 175 aa10□□□□□ -0.81
SHKBP1-218ENST00000598907 PEX7O00628 323 aa10□□□□□ -0.81
SHKBP1-218ENST00000598907 PDE6DO43924 150 aa10□□□□□ -0.81
SHKBP1-218ENST00000598907 SRSF3P84103 164 aaKnown RBP10□□□□□ -0.81
SHKBP1-218ENST00000598907 GDF5OSQ5U4N7 250 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms