RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FAM122CQ6P4D5 195 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 ZNF767PQ75MW2 155 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 OR10G4Q8NGN3 311 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 OR10G9Q8NGN4 311 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 OR10G7Q8NGN6 311 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 SUN5Q8TC36 379 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 NIPSNAP3BQ9BS92 247 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 APLNQ9ULZ1 77 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 A0A1W2PPV4 95 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 LYRM9A8MSI8 78 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 EIF3GO75821 320 aaKnown RBP eCLIP11.47□□□□□ -0.57
TRIM28-213ENST00000598355 CDC34P49427 236 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-213ENST00000598355 LGALS9CQ6DKI2 356 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 ZNF493Q6ZR52 646 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 ZFAND2AQ8N6M9 145 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 ARL6IP6Q8N6S5 226 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 TMEM263Q8WUH6 116 aaKnown RBP11.47□□□□□ -0.57
TRIM28-213ENST00000598355 GNPNAT1Q96EK6 184 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-213ENST00000598355 C16orf74Q96GX8 76 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 LINC01587Q99440 93 aa11.47□□□□□ -0.57
TRIM28-213ENST00000598355 DEFB131BA0A096LNP1 70 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 ARPC5O15511 151 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 MBP02144 154 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 ARL14EPLP0DKL9 152 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 RANP62826 216 aaKnown RBP11.46□□□□□ -0.57
TRIM28-213ENST00000598355 ZNF345Q14585 488 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 RAB24Q969Q5 203 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 VGLL1Q99990 258 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 OTORQ9NRC9 128 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 ZNF492Q9P255 531 aa11.46□□□□□ -0.57
TRIM28-213ENST00000598355 IGHV4-4A0A075B6R2 117 aa11.45□□□□□ -0.58
TRIM28-213ENST00000598355 BORCS7-ASMTA0A0B4J1R7 106 aa11.45□□□□□ -0.58
TRIM28-213ENST00000598355 C7orf71A4D174 169 aa11.45□□□□□ -0.58
TRIM28-213ENST00000598355 TAAR5O14804 337 aa11.45□□□□□ -0.58
TRIM28-213ENST00000598355 PYGO2Q9BRQ0 406 aa11.45□□□□□ -0.58
TRIM28-213ENST00000598355 LINC00467Q9BRT7 94 aa11.45□□□□□ -0.58
TRIM28-213ENST00000598355 CYTL1Q9NRR1 136 aa11.45□□□□□ -0.58
TRIM28-213ENST00000598355 DNAH6Q9C0G6 4158 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 HMSDA8MTL9 139 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 IGLL5B9A064 214 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 DIRC3C9JPN6 131 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 SMLR1H3BR10 107 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 ZNF324O75467 553 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-213ENST00000598355 TMEM78Q5T7P6 136 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 PRR9Q5T870 116 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 SSX7Q7RTT5 188 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 OR11H4Q8NGC9 324 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 TMED6Q8WW62 240 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 LENEPQ9Y5L5 61 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 VPS13DQ5THJ4 4388 aa11.44□□□□□ -0.58
TRIM28-213ENST00000598355 TRAV12-3A0A0B4J271 114 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 HMGB3O15347 200 aaKnown RBP11.43□□□□□ -0.58
TRIM28-213ENST00000598355 LY6G6CO95867 125 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 CSN1S1P47710 185 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 ZNF138P52744 262 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 DAD1P61803 113 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 CD300CQ08708 224 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 BTN1A1Q13410 526 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 KCNRGQ8N5I3 272 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 LINC00612Q8N6U2 182 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 RXFP4Q8TDU9 374 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 FAM210BQ96KR6 192 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 PLA2G2EQ9NZK7 142 aa11.43□□□□□ -0.58
TRIM28-213ENST00000598355 J3KRW8 73 aa11.42□□□□□ -0.58
TRIM28-213ENST00000598355 GCHFRP30047 84 aa11.42□□□□□ -0.58
TRIM28-213ENST00000598355 ZNF726P1Q15940 193 aa11.42□□□□□ -0.58
TRIM28-213ENST00000598355 Q8TAT8 98 aa11.42□□□□□ -0.58
TRIM28-213ENST00000598355 TIMM8BQ9Y5J9 83 aaPredicted RBP11.42□□□□□ -0.58
TRIM28-213ENST00000598355 PGPA6NDG6 321 aa11.41□□□□□ -0.58
TRIM28-213ENST00000598355 ANXA2RQ3ZCQ2 193 aa11.41□□□□□ -0.58
TRIM28-213ENST00000598355 FAM74A1Q5RGS3 127 aa11.41□□□□□ -0.58
TRIM28-213ENST00000598355 ACTR3CQ9C0K3 210 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-213ENST00000598355 MUC4Q99102 2169 aa11.4□□□□□ -0.58
TRIM28-213ENST00000598355 CTXND1A0A1B0GTU2 59 aa11.4□□□□□ -0.58
TRIM28-213ENST00000598355 CXorf1O96002 111 aa11.4□□□□□ -0.58
TRIM28-213ENST00000598355 C11orf72Q8NBR9 251 aa11.4□□□□□ -0.58
TRIM28-213ENST00000598355 ST6GAL2Q96JF0 529 aa11.4□□□□□ -0.58
TRIM28-213ENST00000598355 TMEM167BQ9NRX6 74 aa11.4□□□□□ -0.58
TRIM28-213ENST00000598355 NACAE9PAV3 2078 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 GGTLC3B5MD39 225 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 GPX1P07203 203 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 HTN1P15515 57 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 DAZ2Q13117 558 aaKnown RBP11.39□□□□□ -0.59
TRIM28-213ENST00000598355 Q6AWC8 147 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 CCDC28AQ8IWP9 274 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 C5orf17Q8NAS9 161 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 ARPC5LQ9BPX5 153 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 NDUFAF3Q9BU61 184 aa11.39□□□□□ -0.59
TRIM28-213ENST00000598355 NOP10Q9NPE3 64 aaKnown RBP11.39□□□□□ -0.59
TRIM28-213ENST00000598355 SERTM2A0A1B0GWG4 89 aa11.38□□□□□ -0.59
TRIM28-213ENST00000598355 RNASE4P34096 147 aaKnown RBP11.38□□□□□ -0.59
TRIM28-213ENST00000598355 IBA57Q5T440 356 aaKnown RBP11.38□□□□□ -0.59
TRIM28-213ENST00000598355 Q6ZNX1 250 aa11.38□□□□□ -0.59
TRIM28-213ENST00000598355 Q6ZQT7 251 aa11.38□□□□□ -0.59
TRIM28-213ENST00000598355 EIF4E3Q8N5X7 224 aaKnown RBP11.38□□□□□ -0.59
TRIM28-213ENST00000598355 ZNF680Q8NEM1 530 aa11.38□□□□□ -0.59
TRIM28-213ENST00000598355 CMTM2Q8TAZ6 248 aa11.38□□□□□ -0.59
TRIM28-213ENST00000598355 HYLS1Q96M11 299 aa11.38□□□□□ -0.59
TRIM28-213ENST00000598355 A0A0D9SG52 128 aa11.37□□□□□ -0.59
TRIM28-213ENST00000598355 CBY3A6NI87 242 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms