RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LENEPQ9Y5L5 61 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 FBN1P35555 2871 aaKnown RBP11.4□□□□□ -0.58
TRIM28-209ENST00000597423 OR11H12B2RN74 326 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 LTAP01374 205 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 HIST1H1AQ02539 215 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-209ENST00000597423 BEAN1Q3B7T3 259 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 TMEM183AQ8IXX5 376 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 OCC1Q8TAD7 63 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 SGK494Q96LW2 274 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 VGLL1Q99990 258 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 AGPAT4-IT1Q9H0P7 198 aa11.39□□□□□ -0.59
TRIM28-209ENST00000597423 WNK1Q9H4A3 2382 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 TRAV8-1A0A0A6YYK1 113 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 TRBV7-9A0A0J9YWB2 115 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 NPIPB6E9PJ23 425 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 IGLV2-11P01706 119 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 ERCC8Q13216 396 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 ADIRFQ15847 76 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 Q86TA4 180 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 FAM24BQ8N5W8 94 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 IGF2BP2-AS1Q96M15 143 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 MDFIQ99750 246 aa11.38□□□□□ -0.59
TRIM28-209ENST00000597423 SAV1Q9H4B6 383 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-209ENST00000597423 A0A0J9YX75 114 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 WIPF1O43516 503 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 MT-ND4LP03901 98 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 CT45A10P0DMU9 189 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 MGST1P10620 155 aaKnown RBP11.37□□□□□ -0.59
TRIM28-209ENST00000597423 IGLL1P15814 213 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 RPL23P62829 140 aaKnown RBP11.37□□□□□ -0.59
TRIM28-209ENST00000597423 LINC01551Q86U37 167 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 GTSCR1Q86UQ5 136 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 CLRN3Q8NCR9 226 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 DAZAP1Q96EP5 407 aaKnown RBP11.37□□□□□ -0.59
TRIM28-209ENST00000597423 PRR25Q96S07 402 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 MAP6D1Q9H9H5 199 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 ZNF492Q9P255 531 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 TENM1Q9UKZ4 2725 aa11.37□□□□□ -0.59
TRIM28-209ENST00000597423 GCGP01275 180 aa11.36□□□□□ -0.59
TRIM28-209ENST00000597423 TSPOP30536 169 aa11.36□□□□□ -0.59
TRIM28-209ENST00000597423 RHEBQ15382 184 aa11.36□□□□□ -0.59
TRIM28-209ENST00000597423 SMUG1Q53HV7 270 aa11.36□□□□□ -0.59
TRIM28-209ENST00000597423 C15orf54Q8N8G6 183 aa11.36□□□□□ -0.59
TRIM28-209ENST00000597423 ODF3Q96PU9 254 aa11.36□□□□□ -0.59
TRIM28-209ENST00000597423 MLST8Q9BVC4 326 aa11.36□□□□□ -0.59
TRIM28-209ENST00000597423 TRBV20OR9-2A0A075B6H5 130 aa11.35□□□□□ -0.59
TRIM28-209ENST00000597423 PPP1R2P9O14990 202 aa11.35□□□□□ -0.59
TRIM28-209ENST00000597423 LEPP41159 167 aa11.35□□□□□ -0.59
TRIM28-209ENST00000597423 ACTL10Q5JWF8 245 aa11.35□□□□□ -0.59
TRIM28-209ENST00000597423 COX8CQ7Z4L0 72 aa11.35□□□□□ -0.59
TRIM28-209ENST00000597423 OR4B1Q8NGF8 309 aa11.35□□□□□ -0.59
TRIM28-209ENST00000597423 F6UB75 175 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 ZNF705DP0CH99 300 aaPredicted RBP11.34□□□□□ -0.59
TRIM28-209ENST00000597423 ZNF705BP0CI00 300 aaPredicted RBP11.34□□□□□ -0.59
TRIM28-209ENST00000597423 HLA-DRB4P13762 266 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 ERVFC1-1P60608 527 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 STHQ8IWL8 128 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 ANAPC16Q96DE5 110 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 CLUHP3Q96NS8 147 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 ASCL2Q99929 193 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 HLA-DRB4X5D2U9 266 aa11.34□□□□□ -0.59
TRIM28-209ENST00000597423 COL6A5A8TX70 2615 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 C7orf77A4D0Y5 90 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 PGPEP1LA6NFU8 196 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 H3BMM0 161 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 IGLV2-8P01709 118 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 PRB4P10163 310 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-209ENST00000597423 ODF3L2Q3SX64 289 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 NHLRC2Q8NBF2 726 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 Q8TAT8 98 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 ISOC2Q96AB3 205 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 CTDSP1Q9GZU7 261 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 RPS10P5Q9NQ39 176 aa11.33□□□□□ -0.6
TRIM28-209ENST00000597423 AURKAIP1Q9NWT8 199 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-209ENST00000597423 KNCNA6PVL3 124 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 FABP5P3A8MUU1 101 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 GPX1P07203 203 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 NUTF2P61970 127 aaKnown RBP11.32□□□□□ -0.6
TRIM28-209ENST00000597423 FAM162BQ5T6X4 162 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 APRG1Q8IVJ8 170 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 OR10G8Q8NGN5 311 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 SPATA3Q8NHX4 192 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 SFRP2Q96HF1 295 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 OSTCQ9NRP0 149 aa11.32□□□□□ -0.6
TRIM28-209ENST00000597423 A0A087WWC5 75 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 K7EN84 100 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 CD7P09564 240 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 CRISP2P16562 243 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 DEFB1P60022 68 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 OR5I1Q13606 314 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 IBA57Q5T440 356 aaKnown RBP11.31□□□□□ -0.6
TRIM28-209ENST00000597423 GDF5OSQ5U4N7 250 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 PRR27Q6MZM9 219 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 FAM231DQ6ZW35 169 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 TMEM242Q9NWH2 141 aa11.31□□□□□ -0.6
TRIM28-209ENST00000597423 IGKV3-20P01619 116 aa11.3□□□□□ -0.6
TRIM28-209ENST00000597423 P01737 135 aa11.3□□□□□ -0.6
TRIM28-209ENST00000597423 AMBPP02760 352 aa11.3□□□□□ -0.6
TRIM28-209ENST00000597423 KRTAP21-3Q3LHN1 58 aa11.3□□□□□ -0.6
TRIM28-209ENST00000597423 ZC2HC1AQ96GY0 325 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms