RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PRNTQ86SH4 94 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 NAT8Q9UHE5 227 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 ZNF705DP0CH99 300 aaPredicted RBP10.91□□□□□ -0.66
VRK3-212ENST00000596814 ZNF705BP0CI00 300 aaPredicted RBP10.91□□□□□ -0.66
VRK3-212ENST00000596814 TMEM78Q5T7P6 136 aa10.91□□□□□ -0.66
VRK3-212ENST00000596814 EBLN2Q6P2I7 272 aa10.91□□□□□ -0.66
VRK3-212ENST00000596814 FOXI2Q6ZQN5 318 aa10.91□□□□□ -0.66
VRK3-212ENST00000596814 C9orf47Q6ZRZ4 202 aa10.91□□□□□ -0.66
VRK3-212ENST00000596814 A0A0J9YX75 114 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 PGPEP1LA6NFU8 196 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 OR11H12B2RN74 326 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 NPIPB6E9PJ23 425 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 LTAP01374 205 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 APOC3P02656 99 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 S100A1P23297 94 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 CMC4P56277 68 aaPredicted RBP10.9□□□□□ -0.66
VRK3-212ENST00000596814 TMEM241Q24JQ0 296 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 GDF5OSQ5U4N7 250 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 BAGE2Q86Y30 109 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 Q8TAT8 98 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 AGPAT4-IT1Q9H0P7 198 aa10.9□□□□□ -0.66
VRK3-212ENST00000596814 SAV1Q9H4B6 383 aaPredicted RBP10.9□□□□□ -0.66
VRK3-212ENST00000596814 TVP23CQ96ET8 276 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 CD7P09564 240 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 ZNF138P52744 262 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 PNRC1Q12796 327 aaPredicted RBP10.89□□□□□ -0.67
VRK3-212ENST00000596814 APRG1Q8IVJ8 170 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 NHLRC2Q8NBF2 726 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 SMIM12Q96EX1 92 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 LINC00477Q96M19 166 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 ASCL2Q99929 193 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 FAM110AQ9BQ89 295 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 NDFIP1Q9BT67 221 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 SDF2L1Q9HCN8 221 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 ZFP30Q9Y2G7 519 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 LY96Q9Y6Y9 160 aa10.89□□□□□ -0.67
VRK3-212ENST00000596814 KNCNA6PVL3 124 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 DUSP14O95147 198 aaKnown RBP10.88□□□□□ -0.67
VRK3-212ENST00000596814 HLA-DRB4P13762 266 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 RPL23P62829 140 aaKnown RBP10.88□□□□□ -0.67
VRK3-212ENST00000596814 ADIRFQ15847 76 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 ZNF124Q15973 351 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 ACTL10Q5JWF8 245 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 LINC01551Q86U37 167 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 GTSCR1Q86UQ5 136 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 AURKAIP1Q9NWT8 199 aaPredicted RBP10.88□□□□□ -0.67
VRK3-212ENST00000596814 ZNF492Q9P255 531 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 HLA-DRB4X5D2U9 266 aa10.88□□□□□ -0.67
VRK3-212ENST00000596814 IGLV2-8P01709 118 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 MGST1P10620 155 aaKnown RBP10.87□□□□□ -0.67
VRK3-212ENST00000596814 OXLD1Q5BKU9 147 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 SAPCD1Q5SSQ6 148 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 TMEM183AQ8IXX5 376 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 SVBPQ8N300 66 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 OCC1Q8TAD7 63 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 PRR25Q96S07 402 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 PPP1R14DQ9NXH3 145 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 AGRNO00468 2067 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 M0R036 132 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 CT45A10P0DMU9 189 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 KRTAP21-3Q3LHN1 58 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 OR4B1Q8NGF8 309 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 MLST8Q9BVC4 326 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 C19orf73Q9NVV2 129 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 LENEPQ9Y5L5 61 aa10.87□□□□□ -0.67
VRK3-212ENST00000596814 K7EN84 100 aa10.86□□□□□ -0.67
VRK3-212ENST00000596814 C8orf49Q96NF6 230 aa10.86□□□□□ -0.67
VRK3-212ENST00000596814 H3BMM0 161 aa10.85□□□□□ -0.67
VRK3-212ENST00000596814 IGKV3-20P01619 116 aa10.85□□□□□ -0.67
VRK3-212ENST00000596814 ODF3Q96PU9 254 aa10.85□□□□□ -0.67
VRK3-212ENST00000596814 WFDC10AQ9H1F0 79 aa10.85□□□□□ -0.67
VRK3-212ENST00000596814 TRBV7-9A0A0J9YWB2 115 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 SNAPINO95295 136 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 OR5I1Q13606 314 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 PRR27Q6MZM9 219 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 STHQ8IWL8 128 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 CLRN3Q8NCR9 226 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 ISOC2Q96AB3 205 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 ZC2HC1AQ96GY0 325 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 FAM19A4Q96LR4 140 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 BIN3Q9NQY0 253 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 CMYA5Q8N3K9 4069 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 A8MTW9 85 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 GCGP01275 180 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 SMUG1Q53HV7 270 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 COX8CQ7Z4L0 72 aa10.84□□□□□ -0.67
VRK3-212ENST00000596814 CRISP2P16562 243 aa10.83□□□□□ -0.68
VRK3-212ENST00000596814 LEPP41159 167 aa10.83□□□□□ -0.68
VRK3-212ENST00000596814 ZFAND2AQ8N6M9 145 aa10.83□□□□□ -0.68
VRK3-212ENST00000596814 ZMAT5Q9UDW3 170 aaKnown RBP10.83□□□□□ -0.68
VRK3-212ENST00000596814 EGFEM1PQ0D2K5 195 aa10.82□□□□□ -0.68
VRK3-212ENST00000596814 RHEBQ15382 184 aa10.82□□□□□ -0.68
VRK3-212ENST00000596814 AMTNQ6UX39 209 aa10.82□□□□□ -0.68
VRK3-212ENST00000596814 CLUHP3Q96NS8 147 aa10.82□□□□□ -0.68
VRK3-212ENST00000596814 PKD1L1Q8TDX9 2849 aa10.82□□□□□ -0.68
VRK3-212ENST00000596814 RBMY1BA6NDE4 496 aaKnown RBP10.81□□□□□ -0.68
VRK3-212ENST00000596814 RBMY1EA6NEQ0 496 aaKnown RBP10.81□□□□□ -0.68
VRK3-212ENST00000596814 B4DEV8 164 aa10.81□□□□□ -0.68
VRK3-212ENST00000596814 G3V4G9 280 aa10.81□□□□□ -0.68
VRK3-212ENST00000596814 J3KRW8 73 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms