RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 FFAR4Q5NUL3 377 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 TEPPQ6URK8 271 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 Q6ZRG5 221 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 CLRN3Q8NCR9 226 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 IGF2BP2-AS1Q96M15 143 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 RPRMQ9NS64 109 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 HIGD1AQ9Y241 93 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 TIMM9Q9Y5J7 89 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 APOBP04114 4563 aaKnown RBP7.4□□□□□ -1.22
LIG1-213ENST00000596672 A0A1B0GV50 99 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 MPDU1O75352 247 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 SNAPINO95295 136 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 OR5G3P0C626 314 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 SPART-AS1P0CW21 52 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 MEOX2P50222 304 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 RAB2AP61019 212 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 SERF2P84101 59 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 RAB31Q13636 194 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 SPATA31B1PQ5VZV4 182 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 MIC13Q5XKP0 118 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 EBLN2Q6P2I7 272 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 OR8A1Q8NGG7 326 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 CARHSP1Q9Y2V2 147 aaKnown RBP7.4□□□□□ -1.22
LIG1-213ENST00000596672 HSPG2P98160 4391 aa7.4□□□□□ -1.22
LIG1-213ENST00000596672 EIF3GO75821 320 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIG1-213ENST00000596672 PSG3Q16557 428 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 GCSAMLQ5JQS6 135 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 C10orf91Q5T1B1 145 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 OR10G4Q8NGN3 311 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 OR10G9Q8NGN4 311 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 OR10G7Q8NGN6 311 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 NIPSNAP3BQ9BS92 247 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 SEC11CQ9BY50 192 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 PXMP4Q9Y6I8 212 aa7.39□□□□□ -1.23
LIG1-213ENST00000596672 M0R2N4 97 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 MBP02144 154 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 H2AFB1P0C5Y9 115 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 IGLC2P0DOY2 106 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 RPL7P18124 248 aaKnown RBP7.38□□□□□ -1.23
LIG1-213ENST00000596672 SELENOTP62341 195 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 ZNF726P1Q15940 193 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 ACOT6Q3I5F7 207 aaPredicted RBP7.38□□□□□ -1.23
LIG1-213ENST00000596672 DPPA3Q6W0C5 159 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 Q6ZR54 194 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 LINC00305Q7Z4B0 112 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 POM121L12Q8N7R1 296 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 ZNF738Q8NE65 137 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 SFT2D1Q8WV19 159 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 GPR82Q96P67 336 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 ZNF331Q9NQX6 463 aaPredicted RBP7.38□□□□□ -1.23
LIG1-213ENST00000596672 SLC39A9Q9NUM3 307 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 GOLT1BQ9Y3E0 138 aa7.38□□□□□ -1.23
LIG1-213ENST00000596672 TMEM189A5PLL7 270 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 F8W036 122 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 HMGB3O15347 200 aaKnown RBP7.37□□□□□ -1.23
LIG1-213ENST00000596672 HBE1P02100 147 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 HTN3P15516 51 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 RPL29P47914 159 aaKnown RBP7.37□□□□□ -1.23
LIG1-213ENST00000596672 CCL20P78556 96 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 HIST1H1AQ02539 215 aaPredicted RBP7.37□□□□□ -1.23
LIG1-213ENST00000596672 RRN3P1Q2M238 152 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 TMEM88Q6PEY1 159 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 LCN15Q6UWW0 184 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 SSX7Q7RTT5 188 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 RPUSD4Q96CM3 377 aaKnown RBP7.37□□□□□ -1.23
LIG1-213ENST00000596672 NDUFAF3Q9BU61 184 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 ACTR3CQ9C0K3 210 aaPredicted RBP7.37□□□□□ -1.23
LIG1-213ENST00000596672 TREM1Q9NP99 234 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 KCNIP2Q9NS61 270 aa7.37□□□□□ -1.23
LIG1-213ENST00000596672 DUSP14O95147 198 aaKnown RBP7.36□□□□□ -1.23
LIG1-213ENST00000596672 NDUFB4O95168 129 aa7.36□□□□□ -1.23
LIG1-213ENST00000596672 FGF8P55075 233 aaPredicted RBP7.36□□□□□ -1.23
LIG1-213ENST00000596672 B2MP61769 119 aa7.36□□□□□ -1.23
LIG1-213ENST00000596672 SAMD13Q5VXD3 122 aa7.36□□□□□ -1.23
LIG1-213ENST00000596672 LYPD6BQ8NI32 183 aa7.36□□□□□ -1.23
LIG1-213ENST00000596672 MBD3L1Q8WWY6 194 aa7.36□□□□□ -1.23
LIG1-213ENST00000596672 ZNF586Q9NXT0 402 aa7.36□□□□□ -1.23
LIG1-213ENST00000596672 IGLV2-18A0A075B6J9 118 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 A0A1W2PPV4 95 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 MAP1LC3B2A6NCE7 125 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 INSP01308 110 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 CT45A10P0DMU9 189 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 SRSF3P84103 164 aaKnown RBP7.35□□□□□ -1.23
LIG1-213ENST00000596672 Q6ZQT7 251 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 RAB24Q969Q5 203 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 MAP1LC3BQ9GZQ8 125 aa7.35□□□□□ -1.23
LIG1-213ENST00000596672 CTXND1A0A1B0GTU2 59 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 M0R3E3 92 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 P0DMU3 169 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 FAM231AP0DMU4 169 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 FAM231CP0DMU5 169 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 DEFB130BP0DP73 79 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 DEFB130AP0DP74 79 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 TSPOP30536 169 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 CDC34P49427 236 aaPredicted RBP7.34□□□□□ -1.23
LIG1-213ENST00000596672 RHOBP62745 196 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 GFI1BQ5VTD9 330 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 C10orf113Q5VZT2 155 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 ATRAIDQ6UW56 229 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 RNASE8Q8TDE3 154 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms