RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ZNF705GA8MUZ8 300 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-212ENST00000596163 NMBP08949 121 aa12.41□□□□□ -0.42
SHKBP1-212ENST00000596163 CCDC28AQ8IWP9 274 aa12.41□□□□□ -0.42
SHKBP1-212ENST00000596163 OR11H4Q8NGC9 324 aa12.41□□□□□ -0.42
SHKBP1-212ENST00000596163 NIPSNAP3BQ9BS92 247 aa12.41□□□□□ -0.42
SHKBP1-212ENST00000596163 IGKV2-40A0A087WW87 121 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 TRAV10A0A0B4J240 114 aa12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 TRBV7-9A0A0J9YWB2 115 aa12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 IGKV2D-40P01614 121 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 GCHFRP30047 84 aa12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 ZNF138P52744 262 aa12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 GFI1BQ5VTD9 330 aa12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 C2CD4CQ8TF44 421 aa12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 HYLS1Q96M11 299 aa12.4□□□□□ -0.42
SHKBP1-212ENST00000596163 CTXND1A0A1B0GTU2 59 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 DIRC3C9JPN6 131 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 J3KRW8 73 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 BCL2L11O43521 198 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 PFDN1O60925 122 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 GPX1P07203 203 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 HTN1P15515 57 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 CRISP2P16562 243 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 ZNF493Q6ZR52 646 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 TCTE3Q8IZS6 198 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 SUN5Q8TC36 379 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 ST6GAL2Q96JF0 529 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 FAM19A4Q96LR4 140 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 VGLL1Q99990 258 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 ZNF471Q9BX82 626 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 ZNF492Q9P255 531 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 DKK2Q9UBU2 259 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 CELA1Q9UNI1 258 aa12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 YTHDF2Q9Y5A9 579 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-212ENST00000596163 TRAV12-3A0A0B4J271 114 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 LCE6AA0A183 80 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 C7orf71A4D174 169 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 TCTAP57738 103 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 C12orf74Q32Q52 190 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 FAM222AQ5U5X8 452 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 Q6ZTC4 211 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 C16orf74Q96GX8 76 aa12.38□□□□□ -0.43
SHKBP1-212ENST00000596163 SERTM2A0A1B0GWG4 89 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 LYRM9A8MSI8 78 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 KLLNB2CW77 178 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 SEC11BP0C7V7 166 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 RNASE4P34096 147 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 KIR3DS1Q14943 382 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 TMUB2Q71RG4 321 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 IQCF2Q8IXL9 164 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 TMED6Q8WW62 240 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 PYGO2Q9BRQ0 406 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 LENEPQ9Y5L5 61 aa12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 KMT2CQ8NEZ4 4911 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-212ENST00000596163 STARD9Q9P2P6 4700 aa12.36□□□□□ -0.43
SHKBP1-212ENST00000596163 UMAD1C9J7I0 102 aa12.36□□□□□ -0.43
SHKBP1-212ENST00000596163 K7EQM0 130 aa12.36□□□□□ -0.43
SHKBP1-212ENST00000596163 STOML3Q8TAV4 291 aa12.36□□□□□ -0.43
SHKBP1-212ENST00000596163 TMEM263Q8WUH6 116 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-212ENST00000596163 RPH3ALQ9UNE2 315 aa12.36□□□□□ -0.43
SHKBP1-212ENST00000596163 DEFB131BA0A096LNP1 70 aa12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 TPT1P13693 172 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 AZU1P20160 251 aa12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 DAD1P61803 113 aa12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 ZNF767PQ75MW2 155 aa12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 AKAP14Q86UN6 197 aa12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 C5orf17Q8NAS9 161 aa12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 TIMM8BQ9Y5J9 83 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 CSMD3Q7Z407 3707 aa12.35□□□□□ -0.43
SHKBP1-212ENST00000596163 A0A1W2PRE2 83 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 IGLL5B9A064 214 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 PRM2P04554 102 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 SUMO1P63165 101 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 ZNF726P1Q15940 193 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 GOLT1AQ6ZVE7 132 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 SSX7Q7RTT5 188 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 ZFAND2AQ8N6M9 145 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 LINC00467Q9BRT7 94 aa12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 NKX6-2Q9C056 277 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-212ENST00000596163 MAP1LC3B2A6NCE7 125 aa12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 ZNF324O75467 553 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 C1QBP02746 253 aa12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 CD300CQ08708 224 aa12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 BTN1A1Q13410 526 aa12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 EIF5AL1Q6IS14 154 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 DPPA3Q6W0C5 159 aa12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 MAP1LC3BQ9GZQ8 125 aa12.33□□□□□ -0.44
SHKBP1-212ENST00000596163 hCG_2014768A0A024R1R8 64 aa12.32□□□□□ -0.44
SHKBP1-212ENST00000596163 SNURFLB1AK76 121 aa12.32□□□□□ -0.44
SHKBP1-212ENST00000596163 RGS13O14921 159 aa12.32□□□□□ -0.44
SHKBP1-212ENST00000596163 EIF4E3Q8N5X7 224 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-212ENST00000596163 ZNF680Q8NEM1 530 aa12.32□□□□□ -0.44
SHKBP1-212ENST00000596163 Q8TAT8 98 aa12.32□□□□□ -0.44
SHKBP1-212ENST00000596163 RNASE8Q8TDE3 154 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-212ENST00000596163 PLAC8L1A1L4L8 177 aa12.31□□□□□ -0.44
SHKBP1-212ENST00000596163 FBLL1A6NHQ2 334 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-212ENST00000596163 CBY3A6NI87 242 aa12.31□□□□□ -0.44
SHKBP1-212ENST00000596163 TCRAP04437 139 aa12.31□□□□□ -0.44
SHKBP1-212ENST00000596163 FGF8P55075 233 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-212ENST00000596163 FAM210BQ96KR6 192 aa12.31□□□□□ -0.44
SHKBP1-212ENST00000596163 NDFIP1Q9BT67 221 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms