RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RNASE8Q8TDE3 154 aaKnown RBP11.52□□□□□ -0.57
TRIM28-206ENST00000595974 FAM19A4Q96LR4 140 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 NDUFAF3Q9BU61 184 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 DNAH6Q9C0G6 4158 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 IGKV2-40A0A087WW87 121 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-206ENST00000595974 RNF222A6NCQ9 220 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 KLLNB2CW77 178 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 J3KRW8 73 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 IGKV2D-40P01614 121 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-206ENST00000595974 CRISP2P16562 243 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 CSN1S1P47710 185 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 PYGO2Q9BRQ0 406 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 AGPAT4-IT1Q9H0P7 198 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 Q9H3A6 140 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 TNFSF18Q9UNG2 199 aa11.51□□□□□ -0.57
TRIM28-206ENST00000595974 TIMM8BQ9Y5J9 83 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-206ENST00000595974 TRAV12-3A0A0B4J271 114 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 C7orf71A4D174 169 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 NMBP08949 121 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 ATP6V0CP27449 155 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 RANP62826 216 aaKnown RBP11.5□□□□□ -0.57
TRIM28-206ENST00000595974 CCDC28AQ8IWP9 274 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 OR10G4Q8NGN3 311 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 OR10G9Q8NGN4 311 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 OR10G7Q8NGN6 311 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 PLA2G2EQ9NZK7 142 aa11.5□□□□□ -0.57
TRIM28-206ENST00000595974 TRBV7-9A0A0J9YWB2 115 aa11.49□□□□□ -0.57
TRIM28-206ENST00000595974 RBAKDNA6NC62 111 aa11.49□□□□□ -0.57
TRIM28-206ENST00000595974 MBP02144 154 aa11.49□□□□□ -0.57
TRIM28-206ENST00000595974 HTN3P15516 51 aa11.49□□□□□ -0.57
TRIM28-206ENST00000595974 CDC34P49427 236 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-206ENST00000595974 SERF2P84101 59 aa11.49□□□□□ -0.57
TRIM28-206ENST00000595974 VGLL1Q99990 258 aa11.49□□□□□ -0.57
TRIM28-206ENST00000595974 BORCS7-ASMTA0A0B4J1R7 106 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 G3V3Q6 166 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 EIF3GO75821 320 aaKnown RBP eCLIP11.48□□□□□ -0.57
TRIM28-206ENST00000595974 DEFB130BP0DP73 79 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 DEFB130AP0DP74 79 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 ZNF138P52744 262 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 FAM74A1Q5RGS3 127 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 RXFP4Q8TDU9 374 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 OTORQ9NRC9 128 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 ZNF492Q9P255 531 aa11.48□□□□□ -0.57
TRIM28-206ENST00000595974 GPX1P07203 203 aa11.47□□□□□ -0.57
TRIM28-206ENST00000595974 P0DMU3 169 aa11.47□□□□□ -0.57
TRIM28-206ENST00000595974 FAM231AP0DMU4 169 aa11.47□□□□□ -0.57
TRIM28-206ENST00000595974 FAM231CP0DMU5 169 aa11.47□□□□□ -0.57
TRIM28-206ENST00000595974 BTN1A1Q13410 526 aa11.47□□□□□ -0.57
TRIM28-206ENST00000595974 ZFAND2AQ8N6M9 145 aa11.47□□□□□ -0.57
TRIM28-206ENST00000595974 GNPNAT1Q96EK6 184 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-206ENST00000595974 LINC00467Q9BRT7 94 aa11.47□□□□□ -0.57
TRIM28-206ENST00000595974 NOP10Q9NPE3 64 aaKnown RBP11.47□□□□□ -0.57
TRIM28-206ENST00000595974 SNURFLB1AK76 121 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 DIRC3C9JPN6 131 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 ZNF324O75467 553 aaPredicted RBP11.46□□□□□ -0.57
TRIM28-206ENST00000595974 STAG3L2P0CL84 134 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 STAG3L3P0CL85 134 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 ARL14EPLP0DKL9 152 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 CD300CQ08708 224 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 RPL7L1Q6DKI1 246 aaKnown RBP11.46□□□□□ -0.57
TRIM28-206ENST00000595974 ARL6IP6Q8N6S5 226 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 ZNF680Q8NEM1 530 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 CMTM2Q8TAZ6 248 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 RAB24Q969Q5 203 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 SH3BGRL3Q9H299 93 aa11.46□□□□□ -0.57
TRIM28-206ENST00000595974 CBY3A6NI87 242 aa11.45□□□□□ -0.58
TRIM28-206ENST00000595974 HMGB3O15347 200 aaKnown RBP11.45□□□□□ -0.58
TRIM28-206ENST00000595974 ATP5G1P05496 136 aa11.45□□□□□ -0.58
TRIM28-206ENST00000595974 RNASE4P34096 147 aaKnown RBP11.45□□□□□ -0.58
TRIM28-206ENST00000595974 ATP5G3P48201 142 aa11.45□□□□□ -0.58
TRIM28-206ENST00000595974 TMEM88Q6PEY1 159 aa11.45□□□□□ -0.58
TRIM28-206ENST00000595974 Q8TAT8 98 aa11.45□□□□□ -0.58
TRIM28-206ENST00000595974 TMED6Q8WW62 240 aa11.45□□□□□ -0.58
TRIM28-206ENST00000595974 LENEPQ9Y5L5 61 aa11.45□□□□□ -0.58
TRIM28-206ENST00000595974 EPPK1P58107 5090 aaKnown RBP11.44□□□□□ -0.58
TRIM28-206ENST00000595974 PGPA6NDG6 321 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 TAAR5O14804 337 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 ARPC5O15511 151 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 ANXA2RQ3ZCQ2 193 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 PRR9Q5T870 116 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 EIF4E3Q8N5X7 224 aaKnown RBP11.44□□□□□ -0.58
TRIM28-206ENST00000595974 LINC00612Q8N6U2 182 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 C15orf53Q8NAA6 179 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 HYLS1Q96M11 299 aa11.44□□□□□ -0.58
TRIM28-206ENST00000595974 ACTR3CQ9C0K3 210 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-206ENST00000595974 GCHFRP30047 84 aa11.43□□□□□ -0.58
TRIM28-206ENST00000595974 DAZ2Q13117 558 aaKnown RBP11.43□□□□□ -0.58
TRIM28-206ENST00000595974 SUN5Q8TC36 379 aa11.43□□□□□ -0.58
TRIM28-206ENST00000595974 RPH3ALQ9UNE2 315 aa11.43□□□□□ -0.58
TRIM28-206ENST00000595974 NACAE9PAV3 2078 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 F5H768 121 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 RGS13O14921 159 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 CXorf1O96002 111 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 IBA57Q5T440 356 aaKnown RBP11.42□□□□□ -0.58
TRIM28-206ENST00000595974 POM121L12Q8N7R1 296 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 C11orf72Q8NBR9 251 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 ST6GAL2Q96JF0 529 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 TMEM167BQ9NRX6 74 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 MUC4Q99102 2169 aa11.42□□□□□ -0.58
TRIM28-206ENST00000595974 IGHV1OR15-1A0A075B7D0 117 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms