RNA–Protein interactions for RNA: ENST00000590619.1

DNMT1-222, Transcript of DNA methyltransferase 1, human

TSL 1 (best)

Gene DNMT1, Length 231 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-222	ENST00000590619	LINC00477	Q96M19	166 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	ARPC5L	Q9BPX5	153 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	VCX3B	Q9H321	246 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	PLAC8	Q9NZF1	115 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	COPZ2	Q9P299	210 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	HSPB7	Q9UBY9	170 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	CACFD1	Q9UGQ2	172 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	TPRKB	Q9Y3C4	175 aa		4	□□□□□ -1.77
DNMT1-222	ENST00000590619	FABP12	A6NFH5	140 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	PRSS46	E5RG02	174 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619		H3BQ15	152 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	TAAR5	O14804	337 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	B3GALNT1	O75752	331 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	IL5	P05113	134 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	OR4E1	P0C645	316 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	SULT1A3	P0DMM9	295 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	SULT1A4	P0DMN0	295 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	CRISP2	P16562	243 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	MXD1	Q05195	221 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	TMEM268	Q5VZI3	342 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	IZUMO2	Q6UXV1	221 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	CYP2G1P	Q6ZSU1	146 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	PRSS48	Q7RTY5	328 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	ZFAND2A	Q8N6M9	145 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	PACRGL	Q8N7B6	248 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	GPX8	Q8TED1	209 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	RNF185	Q96GF1	192 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	PRADC1	Q9BSG0	188 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	SPX	Q9BT56	116 aa		3.99	□□□□□ -1.77
DNMT1-222	ENST00000590619	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	ZNF253	O75346	499 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	NMB	P08949	121 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	OR10J4	P0C629	311 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	AQP4	P55087	323 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	RAB11A	P62491	216 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	RPL19	P84098	196 aa	Known RBP	3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	MUC21	Q5SSG8	566 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	NIT1	Q86X76	327 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	CCDC71L	Q8N9Z2	235 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	ZFAND1	Q8TCF1	268 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	SPACA4	Q8TDM5	124 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	RTBDN	Q9BSG5	229 aa	Predicted RBP	3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	VCX	Q9H320	206 aa		3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	PAIP2B	Q9ULR5	123 aa	Known RBP	3.98	□□□□□ -1.77
DNMT1-222	ENST00000590619	MUC17	Q685J3	4493 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	TRBV6-4	A0A1B0GX49	114 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	FAM231B	A6NCW3	169 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619		M0R3E3	92 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	LINC00869	P0C866	280 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	IGLC2	P0DOY2	106 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	CCR6	P51684	374 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	UBE2M	P61081	183 aa	Known RBP	3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	ENHO	Q6UWT2	76 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	OR13C8	Q8NGS7	320 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	TERB2	Q8NHR7	220 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	ARL6	Q9H0F7	186 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	ARV1	Q9H2C2	271 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	C8orf4	Q9NR00	106 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	PRR13	Q9NZ81	148 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	PXMP4	Q9Y6I8	212 aa		3.97	□□□□□ -1.77
DNMT1-222	ENST00000590619	IGHV3-73	A0A0B4J1V6	119 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	MUC21	A0A0G2JKD1	596 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619		M0R2P5	195 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	CCS	O14618	274 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	GNRH2	O43555	120 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	SLPI	P03973	132 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	SEC11B	P0C7V7	166 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	IAPP	P10997	89 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	SMCO1	Q147U7	214 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	RHOH	Q15669	191 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	TMEM183B	Q1AE95	376 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	LINC00305	Q7Z4B0	112 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	BPIFA4P	Q86YQ2	179 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	TMEM183A	Q8IXX5	376 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	LYPD6B	Q8NI32	183 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	MARCH1	Q8TCQ1	289 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619		Q9H521	79 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	NAA60	Q9H7X0	242 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	BATF3	Q9NR55	127 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619		Q9UF83	564 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	PSORS1C2	Q9UIG4	136 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	RAB26	Q9ULW5	256 aa		3.96	□□□□□ -1.78
DNMT1-222	ENST00000590619	TRAV26-2	A0A0B4J265	109 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	FBLL1	A6NHQ2	334 aa	Known RBP	3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	POLR2G	P62487	172 aa	Known RBP eCLIP	3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	SRSF3	P84103	164 aa	Known RBP	3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	AKR1C1	Q04828	323 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619		Q0VG73	95 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	LCE2C	Q5TA81	110 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	LYZL2	Q7Z4W2	148 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	S100A7A	Q86SG5	101 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	ZNF664	Q8N3J9	261 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	CYB561D1	Q8N8Q1	229 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	PRR26	Q8N8Z3	221 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	OR10G9	Q8NGN4	311 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	C1orf43	Q9BWL3	253 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	SRR	Q9GZT4	340 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	SH3BGRL3	Q9H299	93 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	OR51M1	Q9H341	326 aa		3.95	□□□□□ -1.78
DNMT1-222	ENST00000590619	RNF24	Q9Y225	148 aa		3.95	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms