RNA–Protein interactions for RNA: ENST00000590347.5

CIRBP-228, Transcript of cold inducible RNA binding protein, humanhuman

TSL 2

Gene CIRBP, Length 3,117 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIRBP-228ENST00000590347 MED13LQ71F56 2210 aa11.96□□□□□ -0.49
CIRBP-228ENST00000590347 SRSF9Q13242 221 aaKnown RBP eCLIP11.96□□□□□ -0.53e-7■■□□□ 13.7
CIRBP-228ENST00000590347 Q6ZQT7 251 aa11.96□□□□□ -0.5
CIRBP-228ENST00000590347 CNEP1R1Q8N9A8 125 aa11.96□□□□□ -0.5
CIRBP-228ENST00000590347 NDUFA4L2Q9NRX3 87 aa11.96□□□□□ -0.5
CIRBP-228ENST00000590347 TRAV26-2A0A0B4J265 109 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 HOXA3O43365 443 aaPredicted RBP11.95□□□□□ -0.5
CIRBP-228ENST00000590347 ENSAO43768 121 aaKnown RBP11.95□□□□□ -0.5
CIRBP-228ENST00000590347 DPM2O94777 84 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 WT1P19544 449 aaPredicted RBP11.95□□□□□ -0.5
CIRBP-228ENST00000590347 FAM216BQ8N7L0 139 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 H7C2G1 150 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 HIGD1BQ9P298 99 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 APC2O95996 2303 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 NBASA2RRP1 2371 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 CCL13Q99616 98 aa11.95□□□□□ -0.5
CIRBP-228ENST00000590347 ANKRD11Q6UB99 2663 aaPredicted RBP11.95□□□□□ -0.5
CIRBP-228ENST00000590347 PAX8Q06710 450 aa11.94□□□□□ -0.5
CIRBP-228ENST00000590347 FAM159AQ6UWV7 190 aa11.94□□□□□ -0.5
CIRBP-228ENST00000590347 RPEQ96AT9 228 aa11.94□□□□□ -0.5
CIRBP-228ENST00000590347 TMEM133Q9H2Q1 129 aa11.94□□□□□ -0.5
CIRBP-228ENST00000590347 PROCRQ9UNN8 238 aa11.94□□□□□ -0.5
CIRBP-228ENST00000590347 IGHV3OR16-8A0A075B7F1 116 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 IGKV2-40A0A087WW87 121 aaPredicted RBP11.93□□□□□ -0.5
CIRBP-228ENST00000590347 A0A1W2PPI3 338 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 IGKV2D-40P01614 121 aaPredicted RBP11.93□□□□□ -0.5
CIRBP-228ENST00000590347 IGHV1-2P23083 117 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 PRR7Q8TB68 274 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 DLX4Q92988 240 aaPredicted RBP11.93□□□□□ -0.5
CIRBP-228ENST00000590347 SPTA1P02549 2419 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 SPRY2O43597 315 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 CT45A10P0DMU9 189 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 ANKRD29Q8N6D5 301 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 TRAV8-2A0A0B4J237 113 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 CCL3L1P16619 93 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 MSMPQ1L6U9 139 aa11.93□□□□□ -0.5
CIRBP-228ENST00000590347 EMP1P54849 157 aa11.92□□□□□ -0.5
CIRBP-228ENST00000590347 FDCSPQ8NFU4 85 aa11.92□□□□□ -0.5
CIRBP-228ENST00000590347 PPDPFQ9H3Y8 114 aa11.92□□□□□ -0.5
CIRBP-228ENST00000590347 SH2D1AO60880 128 aa11.92□□□□□ -0.5
CIRBP-228ENST00000590347 KLHL30-AS1Q8NEE0 82 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 CITED1Q99966 193 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 VKORC1Q9BQB6 163 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 HIGD1AQ9Y241 93 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE12JA6NER3 117 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE7O76087 117 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 TCL1BO95988 128 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE12FP0CL80 117 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE12GP0CL81 117 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE12IP0CL82 117 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 SCGB1C2P0DMR2 95 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE4Q13068 117 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 SCGB1D4Q6XE38 83 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 PLEKHB2Q96CS7 222 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 MAP1LC3AQ9H492 121 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 CNTFRP26992 372 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE2BQ13066 116 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE2EQ4V326 116 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 SPRR3Q9UBC9 169 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 GAGE2DQ9UEU5 116 aa11.91□□□□□ -0.5
CIRBP-228ENST00000590347 CRIP2P52943 208 aaPredicted RBP11.9□□□□□ -0.5
CIRBP-228ENST00000590347 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.9□□□□□ -0.5
CIRBP-228ENST00000590347 PPDPFLQ8WWR9 84 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 IGFBPL1Q8WX77 278 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 FAM110AQ9BQ89 295 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 SLC25A39Q9BZJ4 359 aaPredicted RBP11.9□□□□□ -0.5
CIRBP-228ENST00000590347 FBXL15Q9H469 300 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 COL27A1Q8IZC6 1860 aaPredicted RBP11.9□□□□□ -0.5
CIRBP-228ENST00000590347 TRBV7-3A0A075B6L6 115 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 ORM1P02763 201 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 NDUFV3P56181 108 aaKnown RBP11.9□□□□□ -0.5
CIRBP-228ENST00000590347 TTC32Q5I0X7 151 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 OR10X1Q8NGY0 326 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 C8orf46Q8TAG6 207 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 OTORQ9NRC9 128 aa11.9□□□□□ -0.5
CIRBP-228ENST00000590347 TNFRSF6BO95407 300 aa11.89□□□□□ -0.51
CIRBP-228ENST00000590347 EGR2P11161 476 aaPredicted RBP11.89□□□□□ -0.51
CIRBP-228ENST00000590347 ATP5J2P56134 94 aa11.89□□□□□ -0.51
CIRBP-228ENST00000590347 DEFB109BQ30KR1 87 aa11.89□□□□□ -0.51
CIRBP-228ENST00000590347 ZCCHC24Q8N2G6 241 aaKnown RBP11.89□□□□□ -0.51
CIRBP-228ENST00000590347 NCBP2LA6PVI3 153 aaKnown RBP11.89□□□□□ -0.51
CIRBP-228ENST00000590347 ZNF688P0C7X2 276 aa11.89□□□□□ -0.51
CIRBP-228ENST00000590347 TRGV5A0A0B4J1U4 118 aa11.89□□□□□ -0.51
CIRBP-228ENST00000590347 CECR9P0C854 216 aa11.89□□□□□ -0.51
CIRBP-228ENST00000590347 ARL3P36405 182 aa11.89□□□□□ -0.51
CIRBP-228ENST00000590347 ZNF80P51504 273 aaPredicted RBP11.89□□□□□ -0.51
CIRBP-228ENST00000590347 FABP5P3A8MUU1 101 aa11.88□□□□□ -0.51
CIRBP-228ENST00000590347 HLA-DMBP28068 263 aa11.88□□□□□ -0.51
CIRBP-228ENST00000590347 TRPT1Q86TN4 253 aaKnown RBP11.88□□□□□ -0.51
CIRBP-228ENST00000590347 TEN1Q86WV5 123 aa11.88□□□□□ -0.51
CIRBP-228ENST00000590347 RAX2Q96IS3 184 aa11.88□□□□□ -0.51
CIRBP-228ENST00000590347 ARHGAP32A7KAX9 2087 aa11.87□□□□□ -0.51
CIRBP-228ENST00000590347 MDS2Q8NDY4 140 aa11.87□□□□□ -0.51
CIRBP-228ENST00000590347 IGHV3-35A0A0C4DH35 117 aa11.87□□□□□ -0.51
CIRBP-228ENST00000590347 SRRM5B3KS81 715 aa11.87□□□□□ -0.51
CIRBP-228ENST00000590347 SNCGO76070 127 aa11.87□□□□□ -0.51
CIRBP-228ENST00000590347 ZMAT4Q9H898 229 aa11.87□□□□□ -0.51
CIRBP-228ENST00000590347 VSTM5A8MXK1 200 aa11.86□□□□□ -0.51
CIRBP-228ENST00000590347 SUB1P53999 127 aaKnown RBP eCLIP11.86□□□□□ -0.514e-8■□□□□ 10.8
CIRBP-228ENST00000590347 POU2AF1Q16633 256 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms