RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 NRN1Q9NPD7 142 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 UNC79Q9P2D8 2635 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 A0A1B0GW15 77 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 FRMD6-AS1P0C7T7 363 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 Q0VG73 95 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 TMEM78Q5T7P6 136 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 C9orf47Q6ZRZ4 202 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 LGALS9O00182 355 aa10.81□□□□□ -0.68
LIG3-205ENST00000585941 SH2D1AO60880 128 aa10.81□□□□□ -0.68
LIG3-205ENST00000585941 TM4SF20Q53R12 229 aa10.81□□□□□ -0.68
LIG3-205ENST00000585941 OR10J3Q5JRS4 329 aa10.81□□□□□ -0.68
LIG3-205ENST00000585941 REC114Q7Z4M0 266 aa10.81□□□□□ -0.68
LIG3-205ENST00000585941 PGLYRP4Q96LB8 373 aa10.81□□□□□ -0.68
LIG3-205ENST00000585941 LENEPQ9Y5L5 61 aa10.81□□□□□ -0.68
LIG3-205ENST00000585941 TLN2Q9Y4G6 2542 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 TMEM189A5PLL7 270 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 FABP5P3A8MUU1 101 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 A8MWP6 167 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 PRAC2D3DTV9 90 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 HAX1O00165 279 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 OVOL1O14753 267 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 ZNF138P52744 262 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 KRTAP1-1Q07627 177 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 PDZD11Q5EBL8 140 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 C10orf99Q6UWK7 81 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 IL17RELQ6ZVW7 336 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 TMEM18Q96B42 140 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 BORCS7Q96B45 105 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 HIST1H2BLQ99880 126 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 ASCL2Q99929 193 aa10.8□□□□□ -0.68
LIG3-205ENST00000585941 A0A1B0GUT8 65 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 SOCS3O14543 225 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 FABP4P15090 132 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 RIGQ13278 110 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 Q8TAT8 98 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 YAE1D1Q9NRH1 226 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 ITPR2Q14571 2701 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 CAMPP49913 170 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 RPL11P62913 178 aaKnown RBP10.79□□□□□ -0.68
LIG3-205ENST00000585941 Q71RC1 249 aaPredicted RBP10.79□□□□□ -0.68
LIG3-205ENST00000585941 KLHDC1Q8N7A1 406 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 ZNF738Q8NE65 137 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 OR10D4PQ8NGN7 298 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 LINC00477Q96M19 166 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 PACRGQ96M98 296 aaPredicted RBP10.79□□□□□ -0.68
LIG3-205ENST00000585941 AGPAT4-IT1Q9H0P7 198 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 TMEM160Q9NX00 188 aa10.79□□□□□ -0.68
LIG3-205ENST00000585941 DNAJC9-AS1A6NH13 148 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 ESDP10768 282 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 ID1P41134 155 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 HIST1H1AQ02539 215 aaPredicted RBP10.78□□□□□ -0.68
LIG3-205ENST00000585941 ERCC8Q13216 396 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 BAGE3Q86Y29 109 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 OR10J6PQ8NGY7 276 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 DUX5Q96PT3 197 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 ZFHX3Q15911 3703 aa10.78□□□□□ -0.68
LIG3-205ENST00000585941 GRIFINA4D1Z8 144 aa10.77□□□□□ -0.69
LIG3-205ENST00000585941 AMBPP02760 352 aa10.77□□□□□ -0.69
LIG3-205ENST00000585941 GZMBP10144 247 aa10.77□□□□□ -0.69
LIG3-205ENST00000585941 SLAQ13239 276 aa10.77□□□□□ -0.69
LIG3-205ENST00000585941 WFDC12Q8WWY7 111 aa10.77□□□□□ -0.69
LIG3-205ENST00000585941 GCN1Q92616 2671 aaKnown RBP10.77□□□□□ -0.69
LIG3-205ENST00000585941 PRB4P10163 310 aaPredicted RBP10.76□□□□□ -0.69
LIG3-205ENST00000585941 PAFAH1B2P68402 229 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 GDF5OSQ5U4N7 250 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 GATD1Q8NB37 220 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 MYO9AB2RTY4 2548 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 IGHV4OR15-8A0A075B7B6 117 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 A0A087WW49 117 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 TRBV7-9A0A0J9YWB2 115 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 TMEM213A2RRL7 107 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 FAM181BA6NEQ2 426 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 SRIP30626 198 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 ZNF80P51504 273 aaPredicted RBP10.76□□□□□ -0.69
LIG3-205ENST00000585941 LINC01559Q495D7 138 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 DNLZQ5SXM8 178 aa10.76□□□□□ -0.69
LIG3-205ENST00000585941 HOXD3P31249 432 aaPredicted RBP10.75□□□□□ -0.69
LIG3-205ENST00000585941 KIAA1644Q3SXP7 199 aa10.75□□□□□ -0.69
LIG3-205ENST00000585941 Q6ZSV7 163 aa10.75□□□□□ -0.69
LIG3-205ENST00000585941 TMEM256Q8N2U0 113 aa10.75□□□□□ -0.69
LIG3-205ENST00000585941 C4orf3Q8WVX3 66 aa10.75□□□□□ -0.69
LIG3-205ENST00000585941 C20orf173Q96LM9 149 aa10.75□□□□□ -0.69
LIG3-205ENST00000585941 M0QZ24 198 aa10.74□□□□□ -0.69
LIG3-205ENST00000585941 ORM1P02763 201 aa10.74□□□□□ -0.69
LIG3-205ENST00000585941 SYNJ2BPP57105 145 aa10.74□□□□□ -0.69
LIG3-205ENST00000585941 KLF5Q13887 457 aaPredicted RBP10.74□□□□□ -0.69
LIG3-205ENST00000585941 SONP18583 2426 aaKnown RBP10.74□□□□□ -0.69
LIG3-205ENST00000585941 SERF1AO75920 110 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 ARMS2P0C7Q2 107 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 CTRLP40313 264 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 FER1L6-AS1Q8NA97 138 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 ALKBH7Q9BT30 221 aaPredicted RBP10.73□□□□□ -0.69
LIG3-205ENST00000585941 SSBP4Q9BWG4 385 aaPredicted RBP10.73□□□□□ -0.69
LIG3-205ENST00000585941 TP53TG3Q9ULZ0 132 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 NBPF19A0A087WUL8 3843 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 F2Z2F3 143 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 LINC01619G3V211 115 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 RNASE1P07998 156 aaKnown RBP10.73□□□□□ -0.69
LIG3-205ENST00000585941 IGLC6P0CF74 106 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 PYY3Q5JQD4 70 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms