RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TMEM189A5PLL7 270 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 PCP4L1A6NKN8 68 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 A8MWP6 167 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 K7EMT4 169 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 ZNF207O43670 478 aaKnown RBP8.64□□□□□ -1.03
LIG3-204ENST00000585740 SRIP30626 198 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 KLF5Q13887 457 aaPredicted RBP8.64□□□□□ -1.03
LIG3-204ENST00000585740 FAM106AQ4KMX7 169 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 SAMD13Q5VXD3 122 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 C8orf86Q6ZUL3 223 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 TMEM256Q8N2U0 113 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 GATD1Q8NB37 220 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 GTSF1Q8WW33 167 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 C8orf49Q96NF6 230 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 KLK15Q9H2R5 256 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 CSPG4Q6UVK1 2322 aa8.64□□□□□ -1.03
LIG3-204ENST00000585740 SH2D1AO60880 128 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 IGHV3-11P01762 117 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 APOHP02749 345 aaPredicted RBP8.63□□□□□ -1.03
LIG3-204ENST00000585740 ELANEP08246 267 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 FOSL1P15407 271 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 PSMB8P28062 276 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 CAMPP49913 170 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 CRIP1P50238 77 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 Q6ZS46 218 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 C16orf92Q96LL3 132 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 ASCL2Q99929 193 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 SMR3AQ99954 134 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 PPP1R14DQ9NXH3 145 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 TP53TG3Q9ULZ0 132 aa8.63□□□□□ -1.03
LIG3-204ENST00000585740 TRAV8-2A0A0B4J237 113 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 IGHV3-66A0A0C4DH42 116 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 IGHV7-4-1A0A0J9YVY3 117 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 FABP5P3A8MUU1 101 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 SERF1AO75920 110 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 TRBV12-3P01733 135 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 HLA-DMBP28068 263 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 SLAQ13239 276 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 FOXE3Q13461 319 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 KIAA1644Q3SXP7 199 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 TMEM78Q5T7P6 136 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 GDF5OSQ5U4N7 250 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 DMRTA1Q5VZB9 504 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 GPHB5Q86YW7 130 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 KRTAP1-3Q8IUG1 177 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 TMEM86BQ8N661 226 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 VGLL1Q99990 258 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 SAMD10Q9BYL1 202 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 UFC1Q9Y3C8 167 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 LENEPQ9Y5L5 61 aa8.62□□□□□ -1.03
LIG3-204ENST00000585740 JMJD1CQ15652 2540 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 FLNAP21333 2647 aaKnown RBP8.61□□□□□ -1.03
LIG3-204ENST00000585740 IGHV3OR16-13A0A075B7E8 117 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 IGHV3-49A0A0A0MS15 119 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 IGHV3-74A0A0B4J1X5 117 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 ZNF705FA8MVS1 300 aaPredicted RBP8.61□□□□□ -1.03
LIG3-204ENST00000585740 OVOL1O14753 267 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 ZNF138P52744 262 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 HIST1H1AQ02539 215 aaPredicted RBP8.61□□□□□ -1.03
LIG3-204ENST00000585740 IQCJQ1A5X6 159 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 LCE2DQ5TA82 110 aaPredicted RBP8.61□□□□□ -1.03
LIG3-204ENST00000585740 IGFL4Q6B9Z1 124 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 UNQ9165/PRO28630Q6UXU0 137 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 C9orf47Q6ZRZ4 202 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 PRIMA1Q86XR5 153 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 KCNS1Q96KK3 526 aa8.61□□□□□ -1.03
LIG3-204ENST00000585740 ALKBH7Q9BT30 221 aaPredicted RBP8.61□□□□□ -1.03
LIG3-204ENST00000585740 DAZ1Q9NQZ3 744 aaKnown RBP8.61□□□□□ -1.03
LIG3-204ENST00000585740 A0A1B0GUS0 222 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 GZMBP10144 247 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 SIGLECL1Q8N7X8 197 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 SPATA3Q8NHX4 192 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 C18orf32Q8TCD1 76 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 LINC00477Q96M19 166 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 ZNF702PQ9H963 129 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 GSN-AS1Q9NRJ2 163 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 SMPXQ9UHP9 88 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 VPS13CQ709C8 3753 aa8.6□□□□□ -1.03
LIG3-204ENST00000585740 PRAC2D3DTV9 90 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 SMAD7O15105 426 aaKnown RBP8.59□□□□□ -1.03
LIG3-204ENST00000585740 HOXA3O43365 443 aaPredicted RBP8.59□□□□□ -1.03
LIG3-204ENST00000585740 NUPR1O60356 82 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 LINC00310P59036 64 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 ERCC8Q13216 396 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 TMEM95Q3KNT9 176 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 LINC01559Q495D7 138 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 Q8N2B8 174 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 RNF182Q8N6D2 247 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 RNF152Q8N8N0 203 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 ZNF738Q8NE65 137 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 Q8TAT8 98 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 MYOZ3Q8TDC0 251 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 RHPN1-AS1Q9BWJ2 59 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 AGPAT4-IT1Q9H0P7 198 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 NRN1Q9NPD7 142 aa8.59□□□□□ -1.03
LIG3-204ENST00000585740 NSD1Q96L73 2696 aaPredicted RBP8.58□□□□□ -1.04
LIG3-204ENST00000585740 LOC102724200A0A096LPH7 203 aaPredicted RBP8.58□□□□□ -1.04
LIG3-204ENST00000585740 SOCS3O14543 225 aa8.58□□□□□ -1.04
LIG3-204ENST00000585740 ZNF324O75467 553 aaPredicted RBP8.58□□□□□ -1.04
LIG3-204ENST00000585740 GPX1P07203 203 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms