RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 LOC105371267A0A1B0GV96 52 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 C19orf71A6NCJ1 209 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 IZUMO1RA6ND01 250 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 S100A6P06703 90 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 ID1P41134 155 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 TM4SF20Q53R12 229 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 RASL11AQ6T310 242 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 C10orf99Q6UWK7 81 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 GBGT1Q8N5D6 347 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 TSKUQ8WUA8 353 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 C16orf92Q96LL3 132 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 GFRA4Q9GZZ7 299 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 SAV1Q9H4B6 383 aaPredicted RBP7.9□□□□□ -1.14
LIG3-203ENST00000585370 RPP21Q9H633 154 aaKnown RBP7.9□□□□□ -1.14
LIG3-203ENST00000585370 NRN1Q9NPD7 142 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 LENEPQ9Y5L5 61 aa7.9□□□□□ -1.14
LIG3-203ENST00000585370 IGHV3-49A0A0A0MS15 119 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 TRAV8-1A0A0A6YYK1 113 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 NPIPB6E9PJ23 425 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 LINC01619G3V211 115 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 M0QZ24 198 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 OVOL1O14753 267 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 NDUFA7O95182 113 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 KLF5Q13887 457 aaPredicted RBP7.89□□□□□ -1.15
LIG3-203ENST00000585370 PRR27Q6MZM9 219 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 WDR73Q6P4I2 378 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 NHLRC2Q8NBF2 726 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 WIPF2Q8TF74 440 aaPredicted RBP7.89□□□□□ -1.15
LIG3-203ENST00000585370 DPF1Q92782 380 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 SGK494Q96LW2 274 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 PRR25Q96S07 402 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 NAT8BQ9UHF3 227 aa7.89□□□□□ -1.15
LIG3-203ENST00000585370 IGHV4OR15-8A0A075B7B6 117 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 A0A087WW49 117 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 TRAV8-2A0A0B4J237 113 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 XKRY2A2RUG3 117 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 MT-ND6P03923 174 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 TRGC2P03986 189 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 HOXD3P31249 432 aaPredicted RBP7.88□□□□□ -1.15
LIG3-203ENST00000585370 KRTAP10-3P60369 221 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 RPS20P60866 119 aaKnown RBP7.88□□□□□ -1.15
LIG3-203ENST00000585370 RPL11P62913 178 aaKnown RBP7.88□□□□□ -1.15
LIG3-203ENST00000585370 SMUG1Q53HV7 270 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 TMEM78Q5T7P6 136 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 C9orf47Q6ZRZ4 202 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 TCF24Q7RTU0 167 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 OR1N2Q8NGR9 330 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 LINC00477Q96M19 166 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 PEMTQ9UBM1 199 aa7.88□□□□□ -1.15
LIG3-203ENST00000585370 IGKV2-40A0A087WW87 121 aaPredicted RBP7.87□□□□□ -1.15
LIG3-203ENST00000585370 TRBV7-9A0A0J9YWB2 115 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 A0A1B0GUS0 222 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 TMEM213A2RRL7 107 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 SOCS3O14543 225 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 IGKV2D-40P01614 121 aaPredicted RBP7.87□□□□□ -1.15
LIG3-203ENST00000585370 FOXA3P55318 350 aaPredicted RBP7.87□□□□□ -1.15
LIG3-203ENST00000585370 FAM162BQ5T6X4 162 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 ATP5L2Q7Z4Y8 100 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 ASCL2Q99929 193 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 CITED1Q99966 193 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 GNB1LQ9BYB4 327 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 TRAPPC1Q9Y5R8 145 aa7.87□□□□□ -1.15
LIG3-203ENST00000585370 FABP5P3A8MUU1 101 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 ZNF705FA8MVS1 300 aaPredicted RBP7.86□□□□□ -1.15
LIG3-203ENST00000585370 CBLN1P23435 193 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 HLA-DMBP28068 263 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 ZNF138P52744 262 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 SYNJ2BPP57105 145 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 PAFAH1B2P68402 229 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 ACTL10Q5JWF8 245 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 Q6AWC8 147 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 IGFL4Q6B9Z1 124 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 LINC00322Q6ZN03 302 aaPredicted RBP7.86□□□□□ -1.15
LIG3-203ENST00000585370 ZFP82Q8N141 532 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 ZNF738Q8NE65 137 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 OR2D3Q8NGH3 330 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 OR10J6PQ8NGY7 276 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 LINC01006Q8NI28 216 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 ZC2HC1AQ96GY0 325 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 VGLL1Q99990 258 aa7.86□□□□□ -1.15
LIG3-203ENST00000585370 TRAV2A0A0B4J234 112 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 C5orf52A6NGY3 159 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 C2orf70A6NJV1 201 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 PHOX2AO14813 284 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 HLA-DQA1P01909 254 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 TRGC1P0CF51 173 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 HIST1H1AQ02539 215 aaPredicted RBP7.85□□□□□ -1.15
LIG3-203ENST00000585370 TCTEX1D4Q5JR98 221 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 RBPMS2Q6ZRY4 209 aaKnown RBP7.85□□□□□ -1.15
LIG3-203ENST00000585370 RNF182Q8N6D2 247 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 KLHL30-AS1Q8NEE0 82 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 NUP35Q8NFH5 326 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 OR11H1Q8NG94 326 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 AGPAT4-IT1Q9H0P7 198 aa7.85□□□□□ -1.15
LIG3-203ENST00000585370 TSSC4Q9Y5U2 329 aaPredicted RBP7.85□□□□□ -1.15
LIG3-203ENST00000585370 A0A1B0GW15 77 aa7.84□□□□□ -1.15
LIG3-203ENST00000585370 TMEM189A5PLL7 270 aa7.84□□□□□ -1.15
LIG3-203ENST00000585370 HIGD1CA8MV81 97 aa7.84□□□□□ -1.15
LIG3-203ENST00000585370 PRAC2D3DTV9 90 aa7.84□□□□□ -1.15
LIG3-203ENST00000585370 HIST1H2BKO60814 126 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms