RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SNURFLB1AK76 121 aa14.28□□□□□ -0.12
SHMT1-209ENST00000582653 CD300CQ08708 224 aa14.28□□□□□ -0.12
SHMT1-209ENST00000582653 PDE6HQ13956 83 aa14.28□□□□□ -0.12
SHMT1-209ENST00000582653 ICAM4Q14773 271 aa14.28□□□□□ -0.12
SHMT1-209ENST00000582653 PYGO2Q9BRQ0 406 aa14.28□□□□□ -0.12
SHMT1-209ENST00000582653 WDR61Q9GZS3 305 aaKnown RBP14.28□□□□□ -0.12
SHMT1-209ENST00000582653 PTTG2Q9NZH5 202 aa14.28□□□□□ -0.12
SHMT1-209ENST00000582653 PRELID1Q9Y255 219 aa14.28□□□□□ -0.12
SHMT1-209ENST00000582653 PCLOQ9Y6V0 5065 aa14.27□□□□□ -0.12
SHMT1-209ENST00000582653 C7orf71A4D174 169 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 SLC25A5P05141 298 aaKnown RBP14.27□□□□□ -0.13
SHMT1-209ENST00000582653 HOXA5P20719 270 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 CYCSP99999 105 aaKnown RBP14.27□□□□□ -0.13
SHMT1-209ENST00000582653 BTN1A1Q13410 526 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 FAM122CQ6P4D5 195 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 PPP1R1CQ8WVI7 109 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 FAM19A4Q96LR4 140 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 LINC00477Q96M19 166 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 MARVELD1Q9BSK0 173 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 AAMDCQ9H7C9 122 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 LINC00588Q9Y4M8 146 aa14.27□□□□□ -0.13
SHMT1-209ENST00000582653 TRAV26-1A0A087WT03 109 aa14.26□□□□□ -0.13
SHMT1-209ENST00000582653 IGKV2-40A0A087WW87 121 aaPredicted RBP14.26□□□□□ -0.13
SHMT1-209ENST00000582653 A0A0J9YY99 117 aa14.26□□□□□ -0.13
SHMT1-209ENST00000582653 IGKV2D-40P01614 121 aaPredicted RBP14.26□□□□□ -0.13
SHMT1-209ENST00000582653 OR10J4P0C629 311 aa14.26□□□□□ -0.13
SHMT1-209ENST00000582653 NBEAP1P0C6P0 100 aa14.26□□□□□ -0.13
SHMT1-209ENST00000582653 RNASE4P34096 147 aaKnown RBP14.26□□□□□ -0.13
SHMT1-209ENST00000582653 OR51M1Q9H341 326 aa14.26□□□□□ -0.13
SHMT1-209ENST00000582653 KLLNB2CW77 178 aa14.25□□□□□ -0.13
SHMT1-209ENST00000582653 ZNF324O75467 553 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-209ENST00000582653 Q6ZTI0 123 aa14.25□□□□□ -0.13
SHMT1-209ENST00000582653 GNPNAT1Q96EK6 184 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-209ENST00000582653 VGLL1Q99990 258 aa14.25□□□□□ -0.13
SHMT1-209ENST00000582653 GSN-AS1Q9NRJ2 163 aa14.25□□□□□ -0.13
SHMT1-209ENST00000582653 Q6ZQT7 251 aa14.24□□□□□ -0.13
SHMT1-209ENST00000582653 C9orf47Q6ZRZ4 202 aa14.24□□□□□ -0.13
SHMT1-209ENST00000582653 ZNF575Q86XF7 245 aa14.24□□□□□ -0.13
SHMT1-209ENST00000582653 C6orf223Q8N319 242 aa14.24□□□□□ -0.13
SHMT1-209ENST00000582653 FXYD5Q96DB9 178 aa14.24□□□□□ -0.13
SHMT1-209ENST00000582653 PAXXQ9BUH6 204 aa14.24□□□□□ -0.13
SHMT1-209ENST00000582653 SSNA1O43805 119 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 GPX1P07203 203 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 M6PRP20645 277 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 TNP2Q05952 138 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 DAZ2Q13117 558 aaKnown RBP14.23□□□□□ -0.13
SHMT1-209ENST00000582653 PRR9Q5T870 116 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 SSX7Q7RTT5 188 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 C11orf72Q8NBR9 251 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 ZNF503Q96F45 646 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 ATP5SQ99766 215 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 MRPL32Q9BYC8 188 aaKnown RBP14.23□□□□□ -0.13
SHMT1-209ENST00000582653 TMPRSS5Q9H3S3 457 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 FUT9Q9Y231 359 aa14.23□□□□□ -0.13
SHMT1-209ENST00000582653 C17orf112F2Z3M2 114 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 MPC2O95563 127 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 CRISP2P16562 243 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 TMEM78Q5T7P6 136 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 RXFP4Q8TDU9 374 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 PHYHIPLQ96FC7 376 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 SMIM3Q9BZL3 60 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 Q9H8V8 135 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 KCNIP2Q9NS61 270 aa14.22□□□□□ -0.13
SHMT1-209ENST00000582653 EIF4E3Q8N5X7 224 aaKnown RBP14.21□□□□□ -0.13
SHMT1-209ENST00000582653 ZFAND2AQ8N6M9 145 aa14.21□□□□□ -0.13
SHMT1-209ENST00000582653 LINC00467Q9BRT7 94 aa14.21□□□□□ -0.13
SHMT1-209ENST00000582653 ZNF492Q9P255 531 aa14.21□□□□□ -0.13
SHMT1-209ENST00000582653 TP53TG3Q9ULZ0 132 aa14.21□□□□□ -0.13
SHMT1-209ENST00000582653 KLF12Q9Y4X4 402 aa14.21□□□□□ -0.13
SHMT1-209ENST00000582653 HSPB11Q9Y547 144 aa14.21□□□□□ -0.13
SHMT1-209ENST00000582653 H3BNG1 76 aa14.2□□□□□ -0.14
SHMT1-209ENST00000582653 OR7C2O60412 319 aa14.2□□□□□ -0.14
SHMT1-209ENST00000582653 EIF3GO75821 320 aaKnown RBP eCLIP14.2□□□□□ -0.14
SHMT1-209ENST00000582653 DEFA1P59665 94 aa14.2□□□□□ -0.14
SHMT1-209ENST00000582653 DEFA3P59666 94 aa14.2□□□□□ -0.14
SHMT1-209ENST00000582653 RANP62826 216 aaKnown RBP14.2□□□□□ -0.14
SHMT1-209ENST00000582653 FFAR4Q5NUL3 377 aa14.2□□□□□ -0.14
SHMT1-209ENST00000582653 ZNF680Q8NEM1 530 aa14.2□□□□□ -0.14
SHMT1-209ENST00000582653 Q8TAT8 98 aa14.2□□□□□ -0.14
SHMT1-209ENST00000582653 MUC4Q99102 2169 aa14.19□□□□□ -0.14
SHMT1-209ENST00000582653 TRGV2A0A075B6R0 118 aa14.19□□□□□ -0.14
SHMT1-209ENST00000582653 RPL12P30050 165 aaKnown RBP14.19□□□□□ -0.14
SHMT1-209ENST00000582653 ANXA2RQ3ZCQ2 193 aa14.19□□□□□ -0.14
SHMT1-209ENST00000582653 TRGV1A0A0A0MS02 117 aa14.18□□□□□ -0.14
SHMT1-209ENST00000582653 NMBP08949 121 aa14.18□□□□□ -0.14
SHMT1-209ENST00000582653 ZNF138P52744 262 aa14.18□□□□□ -0.14
SHMT1-209ENST00000582653 ESRGQ1W209 222 aa14.18□□□□□ -0.14
SHMT1-209ENST00000582653 WFDC1Q9HC57 220 aa14.18□□□□□ -0.14
SHMT1-209ENST00000582653 MBD2Q9UBB5 411 aa14.18□□□□□ -0.14
SHMT1-209ENST00000582653 RGS13O14921 159 aa14.17□□□□□ -0.14
SHMT1-209ENST00000582653 IFNA5P01569 189 aa14.17□□□□□ -0.14
SHMT1-209ENST00000582653 SCGB1C1Q8TD33 95 aa14.17□□□□□ -0.14
SHMT1-209ENST00000582653 VSIG2Q96IQ7 327 aa14.17□□□□□ -0.14
SHMT1-209ENST00000582653 Q9H3A6 140 aa14.17□□□□□ -0.14
SHMT1-209ENST00000582653 IGHV1OR15-1A0A075B7D0 117 aa14.16□□□□□ -0.14
SHMT1-209ENST00000582653 PET100P0DJ07 73 aa14.16□□□□□ -0.14
SHMT1-209ENST00000582653 TCL1AP56279 114 aa14.16□□□□□ -0.14
SHMT1-209ENST00000582653 UBE2L3P68036 154 aaKnown RBP14.16□□□□□ -0.14
SHMT1-209ENST00000582653 C18orf15Q96N68 181 aa14.16□□□□□ -0.14
SHMT1-209ENST00000582653 UPK3BQ9BT76 320 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms