RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 GDF5OSQ5U4N7 250 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 Q86TA4 180 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 OR10J6PQ8NGY7 276 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 SMIM7Q9BQ49 75 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 AGPAT4-IT1Q9H0P7 198 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 HLA-DRB4X5D2U9 266 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 TRBV7-9A0A0J9YWB2 115 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 ZNF727A8MUV8 499 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 LTAP01374 205 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 PRB4P10163 310 aaPredicted RBP11.96□□□□□ -0.49
SS18-211ENST00000578954 CEBPGP53567 150 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 EBLN2Q6P2I7 272 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 SMIM12Q96EX1 92 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 LINC00477Q96M19 166 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 CLUHP3Q96NS8 147 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 ODF3Q96PU9 254 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 ZNF492Q9P255 531 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 ZMAT5Q9UDW3 170 aaKnown RBP11.96□□□□□ -0.49
SS18-211ENST00000578954 PSG8Q9UQ74 426 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 CARHSP1Q9Y2V2 147 aaKnown RBP11.96□□□□□ -0.49
SS18-211ENST00000578954 LENEPQ9Y5L5 61 aa11.96□□□□□ -0.49
SS18-211ENST00000578954 KRBOX1C9JBD0 128 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 DUSP14O95147 198 aaKnown RBP11.95□□□□□ -0.5
SS18-211ENST00000578954 HIST1H1AQ02539 215 aaPredicted RBP11.95□□□□□ -0.5
SS18-211ENST00000578954 ERCC8Q13216 396 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 ZNF674Q2M3X9 581 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 CENPWQ5EE01 88 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 TMEM78Q5T7P6 136 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 COX8CQ7Z4L0 72 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 FAM19A4Q96LR4 140 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 ZFP30Q9Y2G7 519 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 LY96Q9Y6Y9 160 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 DNHD1Q96M86 4753 aa11.95□□□□□ -0.5
SS18-211ENST00000578954 F8W036 122 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 H3BMM0 161 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 ZNF705DP0CH99 300 aaPredicted RBP11.94□□□□□ -0.5
SS18-211ENST00000578954 ZNF705BP0CI00 300 aaPredicted RBP11.94□□□□□ -0.5
SS18-211ENST00000578954 ZNF138P52744 262 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 GTSCR1Q86UQ5 136 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 APRG1Q8IVJ8 170 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 TVP23CQ96ET8 276 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 SGK494Q96LW2 274 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 MLST8Q9BVC4 326 aa11.94□□□□□ -0.5
SS18-211ENST00000578954 KNCNA6PVL3 124 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 IGLV2-8P01709 118 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 CT45A10P0DMU9 189 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 GNG4P50150 75 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 ZNF124Q15973 351 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 ACTL10Q5JWF8 245 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 AMTNQ6UX39 209 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 PRNTQ86SH4 94 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 BAGE2Q86Y30 109 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 Q8N1Y9 231 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 Q8TAT8 98 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 PRR25Q96S07 402 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 NAT8Q9UHE5 227 aa11.93□□□□□ -0.5
SS18-211ENST00000578954 PKD1L1Q8TDX9 2849 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 AGRNO00468 2067 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 G3V4G9 280 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 CRISP2P16562 243 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 KRTAP10-11P60412 298 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 SAPCD1Q5SSQ6 148 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 TMEM183AQ8IXX5 376 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 NIPSNAP3BQ9BS92 247 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 SDF2L1Q9HCN8 221 aa11.92□□□□□ -0.5
SS18-211ENST00000578954 TMEM241Q24JQ0 296 aa11.91□□□□□ -0.5
SS18-211ENST00000578954 KPRPQ5T749 579 aaPredicted RBP11.91□□□□□ -0.5
SS18-211ENST00000578954 TRPT1Q86TN4 253 aaKnown RBP11.91□□□□□ -0.5
SS18-211ENST00000578954 LINC01551Q86U37 167 aa11.91□□□□□ -0.5
SS18-211ENST00000578954 NDFIP1Q9BT67 221 aa11.91□□□□□ -0.5
SS18-211ENST00000578954 WFDC10AQ9H1F0 79 aa11.91□□□□□ -0.5
SS18-211ENST00000578954 RBMY1BA6NDE4 496 aaKnown RBP11.9□□□□□ -0.5
SS18-211ENST00000578954 RBMY1EA6NEQ0 496 aaKnown RBP11.9□□□□□ -0.5
SS18-211ENST00000578954 PGPEP1LA6NFU8 196 aa11.9□□□□□ -0.5
SS18-211ENST00000578954 ATP6V1G1O75348 118 aa11.9□□□□□ -0.5
SS18-211ENST00000578954 RBMY1DP0C7P1 496 aaKnown RBP11.9□□□□□ -0.5
SS18-211ENST00000578954 PNRC1Q12796 327 aaPredicted RBP11.9□□□□□ -0.5
SS18-211ENST00000578954 ZFAND2AQ8N6M9 145 aa11.9□□□□□ -0.5
SS18-211ENST00000578954 OCC1Q8TAD7 63 aa11.9□□□□□ -0.5
SS18-211ENST00000578954 DNAH3Q8TD57 4116 aa11.9□□□□□ -0.5
SS18-211ENST00000578954 MGAM2Q2M2H8 2515 aa11.9□□□□□ -0.5
SS18-211ENST00000578954 KLLNB2CW77 178 aa11.89□□□□□ -0.51
SS18-211ENST00000578954 GCGP01275 180 aa11.89□□□□□ -0.51
SS18-211ENST00000578954 RPL23P62829 140 aaKnown RBP11.89□□□□□ -0.51
SS18-211ENST00000578954 STHQ8IWL8 128 aa11.89□□□□□ -0.51
SS18-211ENST00000578954 OR4B1Q8NGF8 309 aa11.89□□□□□ -0.51
SS18-211ENST00000578954 K7EN84 100 aa11.88□□□□□ -0.51
SS18-211ENST00000578954 LEPP41159 167 aa11.88□□□□□ -0.51
SS18-211ENST00000578954 DEFB125Q8N687 156 aa11.88□□□□□ -0.51
SS18-211ENST00000578954 ZC2HC1AQ96GY0 325 aa11.88□□□□□ -0.51
SS18-211ENST00000578954 C8orf49Q96NF6 230 aa11.88□□□□□ -0.51
SS18-211ENST00000578954 ASCL2Q99929 193 aa11.88□□□□□ -0.51
SS18-211ENST00000578954 TSPOP30536 169 aa11.87□□□□□ -0.51
SS18-211ENST00000578954 SMUG1Q53HV7 270 aa11.87□□□□□ -0.51
SS18-211ENST00000578954 NHLRC2Q8NBF2 726 aa11.87□□□□□ -0.51
SS18-211ENST00000578954 BIN3Q9NQY0 253 aa11.87□□□□□ -0.51
SS18-211ENST00000578954 IGKV3-20P01619 116 aa11.86□□□□□ -0.51
SS18-211ENST00000578954 CDKN1BP46527 198 aa11.86□□□□□ -0.51
SS18-211ENST00000578954 PRR9Q5T870 116 aa11.86□□□□□ -0.51
SS18-211ENST00000578954 ISOC2Q96AB3 205 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms