RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CRIP2P52943 208 aaPredicted RBP4.45□□□□□ -1.7
VPS53-212ENST00000572259 SYNJ2BPP57105 145 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 FXYD4P59646 89 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 DAD1P61803 113 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 GNB1P62873 340 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 SSBP1Q04837 148 aaKnown RBP4.45□□□□□ -1.7
VPS53-212ENST00000572259 TCTEX1D4Q5JR98 221 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 COA6Q5JTJ3 125 aaKnown RBP4.45□□□□□ -1.7
VPS53-212ENST00000572259 TMEM78Q5T7P6 136 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 C9orf66Q5T8R8 295 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 SPATA31B1PQ5VZV4 182 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 REG3GQ6UW15 175 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 C10orf99Q6UWK7 81 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 SLC25A42Q86VD7 318 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 SNX29P2Q8IUI4 249 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 TMEM252Q8N6L7 170 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 WFDC9Q8NEX5 89 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 GRPEL2Q8TAA5 225 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 OR2A7Q96R45 310 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 SPIN2AQ99865 258 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 SPIN2BQ9BPZ2 258 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 EDA2RQ9HAV5 297 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 ZNF355PQ9NSJ1 428 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 TAS2R8Q9NYW2 309 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 RPL37AP8A6NKH3 93 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 G3V318 75 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 H3BUA1 57 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 CYB5BO43169 146 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 RBFOX2O43251 390 aaKnown RBP eCLIP4.44□□□□□ -1.7
VPS53-212ENST00000572259 IGHV3-48P01763 117 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 ATP5G1P05496 136 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 PTHLHP12272 177 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 DEFA6Q01524 100 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 IFITM3Q01628 133 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 PRR4Q16378 134 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 RNASE10Q5GAN6 216 aaKnown RBP4.44□□□□□ -1.7
VPS53-212ENST00000572259 AADACL3Q5VUY0 350 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 SLC16A13Q7RTY0 426 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 OR4A5Q8NH83 315 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 C4orf3Q8WVX3 66 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 SMIM8Q96KF7 97 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 SEC22CQ9BRL7 303 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 CCL28Q9NRJ3 127 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 MRPL27Q9P0M9 148 aaKnown RBP4.44□□□□□ -1.7
VPS53-212ENST00000572259 RSL24D1Q9UHA3 163 aaKnown RBP4.44□□□□□ -1.7
VPS53-212ENST00000572259 ANAPC10Q9UM13 185 aa4.44□□□□□ -1.7
VPS53-212ENST00000572259 MAP1LC3B2A6NCE7 125 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 GABARAPH6UMI1 98 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 K7EPK0 472 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 IGKV3-20P01619 116 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 IGLV2-23P01705 113 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 TRGV3P03979 118 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 PFN1P07737 140 aaKnown RBP4.43□□□□□ -1.7
VPS53-212ENST00000572259 SAA1P0DJI8 122 aaPredicted RBP4.43□□□□□ -1.7
VPS53-212ENST00000572259 PGAM2P15259 253 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 TPPP2P59282 170 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 RPL30P62888 115 aaKnown RBP4.43□□□□□ -1.7
VPS53-212ENST00000572259 RUNX1Q01196 453 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 ZNF616Q08AN1 781 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 SURF2Q15527 256 aaPredicted RBP4.43□□□□□ -1.7
VPS53-212ENST00000572259 C6orf99Q4VX62 202 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 AKR1C8PQ5T2L2 129 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 ADAMTSL4-AS1Q5T5F5 129 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 ZNF818PQ6ZRF7 136 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 LINC00173Q6ZV60 143 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 TMEM229BQ8NBD8 167 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 OR51H1Q8NH63 302 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 ZNRF2Q8NHG8 242 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 RXFP4Q8TDU9 374 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 ISOC1Q96CN7 298 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 USMG5Q96IX5 58 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 FAM103A1Q9BTL3 118 aaKnown RBP4.43□□□□□ -1.7
VPS53-212ENST00000572259 GNB1LQ9BYB4 327 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 MAP1LC3BQ9GZQ8 125 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 JPT2Q9H910 190 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 SLC25A22Q9H936 323 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 WFDC1Q9HC57 220 aa4.43□□□□□ -1.7
VPS53-212ENST00000572259 SMIM26A0A096LP01 95 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 H3BP45 60 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 PGLYRP1O75594 196 aaPredicted RBP4.42□□□□□ -1.7
VPS53-212ENST00000572259 SNAPC5O75971 98 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 KBTBD11O94819 623 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 HSPB1P04792 205 aaKnown RBP4.42□□□□□ -1.7
VPS53-212ENST00000572259 FAUP35544 74 aaKnown RBP4.42□□□□□ -1.7
VPS53-212ENST00000572259 AKR1C3P42330 323 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 RPL27AP46776 148 aaKnown RBP4.42□□□□□ -1.7
VPS53-212ENST00000572259 INSL3P51460 131 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 CCR6P51684 374 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 CENPWQ5EE01 88 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 SAMD13Q5VXD3 122 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 GSG1LQ6UXU4 331 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 IDO2Q6ZQW0 420 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 ZNF493Q6ZR52 646 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 TERB2Q8NHR7 220 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 TMEM167AQ8TBQ9 72 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 RBMXL1Q96E39 390 aaKnown RBP4.42□□□□□ -1.7
VPS53-212ENST00000572259 DNAJC30Q96LL9 226 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 LINC00477Q96M19 166 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 COMMD5Q9GZQ3 224 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 SPANXCQ9NY87 97 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms