RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 MEOX2P50222 304 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 NANOS2P60321 138 aaKnown RBP4.57□□□□□ -1.68
VPS39-209ENST00000568029 YPEL3P61236 119 aaPredicted RBP4.57□□□□□ -1.68
VPS39-209ENST00000568029 LYZP61626 148 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 UBE2G1P62253 170 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 RANP62826 216 aaKnown RBP4.57□□□□□ -1.68
VPS39-209ENST00000568029 PAX8Q06710 450 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 GAGE2BQ13066 116 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 RPEL1Q2QD12 228 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 COX19Q49B96 90 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 GAGE2EQ4V326 116 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 CENPWQ5EE01 88 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 GAGE2AQ6NT46 116 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 ZNF329Q86UD4 541 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 BAGE2Q86Y30 109 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 OR4F17Q8NGA8 305 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 FXYD5Q96DB9 178 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 TBX15Q96SF7 602 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 ESM1Q9NQ30 184 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 GAGE2DQ9UEU5 116 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 EPDR1Q9UM22 224 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 HERC2O95714 4834 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 ARFGEF3Q5TH69 2177 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 IGLV11-55A0A075B6I3 123 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 TRBV9A0A0B4J1U6 114 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 IGKV1-17P01599 117 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 PRB2P02812 416 aaPredicted RBP4.56□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H1EP10412 219 aaKnown RBP4.56□□□□□ -1.68
VPS39-209ENST00000568029 SAA4P35542 130 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 Q56UQ5 140 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 C19orf35Q6ZS72 473 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 BPIFA4PQ86YQ2 179 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 DYNAPQ8N1N2 210 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 LYPD1Q8N2G4 141 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 C5orf17Q8NAS9 161 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 VN1R17PQ8TDU5 208 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 BLNKQ8WV28 456 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 SMIM12Q96EX1 92 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 SHANK2-AS3Q9BTD1 123 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 SLC25A39Q9BZJ4 359 aaPredicted RBP4.56□□□□□ -1.68
VPS39-209ENST00000568029 OTORQ9NRC9 128 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 C21orf62Q9NYP8 219 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 MRPL27Q9P0M9 148 aaKnown RBP4.56□□□□□ -1.68
VPS39-209ENST00000568029 TRAPPC1Q9Y5R8 145 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 TNFRSF18Q9Y5U5 241 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 WNK1Q9H4A3 2382 aa4.56□□□□□ -1.68
VPS39-209ENST00000568029 IGHV1-69DA0A0B4J2H0 117 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 CENPVL3A0A0U1RRI6 287 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 WI2-2373I1.2A0A1W2PRP0 233 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 XKRY2A2RUG3 117 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 ZNF705GA8MUZ8 300 aaPredicted RBP4.55□□□□□ -1.68
VPS39-209ENST00000568029 K7EN84 100 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 K7EQM0 130 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 GATCO43716 136 aaKnown RBP4.55□□□□□ -1.68
VPS39-209ENST00000568029 IGHV1-69P01742 117 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 GP9P14770 177 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 SLC25A16P16260 332 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 FCGR2BP31994 310 aaPredicted RBP4.55□□□□□ -1.68
VPS39-209ENST00000568029 MYCNOSP40205 109 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 S100A12P80511 92 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 OR5I1Q13606 314 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 TMEM183BQ1AE95 376 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 ACTL10Q5JWF8 245 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 IBA57Q5T440 356 aaKnown RBP4.55□□□□□ -1.68
VPS39-209ENST00000568029 ZNF600Q6ZNG1 722 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 FAM231DQ6ZW35 169 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 HIST3H2BBQ8N257 126 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 Q8N9W7 124 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 CMTM2Q8TAZ6 248 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 FMC1Q96HJ9 113 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 IGF2BP2-AS1Q96M15 143 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 GPR82Q96P67 336 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 ATG101Q9BSB4 218 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 FAM103A1Q9BTL3 118 aaKnown RBP4.55□□□□□ -1.68
VPS39-209ENST00000568029 Q9H3A6 140 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 KLF12Q9Y4X4 402 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 V9GYV3 84 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 DOCK11Q5JSL3 2073 aa4.55□□□□□ -1.68
VPS39-209ENST00000568029 TET2Q6N021 2002 aaPredicted RBP4.55□□□□□ -1.68
VPS39-209ENST00000568029 IGHV7-81A0A0B4J1V7 117 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 H3BRN7 92 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 SLC17A3O00476 420 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 PHOX2AO14813 284 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 OR2J3O76001 311 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 IGLV2-8P01709 118 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 MT-ND6P03923 174 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 IL4P05112 153 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 CSN1S1P47710 185 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 RAB9AP51151 201 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 KLK9Q2XQG4 91 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 KLF17Q5JT82 389 aaPredicted RBP4.54□□□□□ -1.68
VPS39-209ENST00000568029 COA6Q5JTJ3 125 aaKnown RBP4.54□□□□□ -1.68
VPS39-209ENST00000568029 RUSC1-AS1Q66K80 236 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 UNQ5815/PRO19632Q6UWF5 114 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 Q75L30 129 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 TMEM183AQ8IXX5 376 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 ARL6IP6Q8N6S5 226 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 ZNF491Q8N8L2 437 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 OR5R1Q8NH85 324 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 LYSTQ99698 3801 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms