RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RARRES2Q99969 163 aa15.2■□□□□ 0.02
CLN3-212ENST00000564574 AGPAT4-IT1Q9H0P7 198 aa15.2■□□□□ 0.02
CLN3-212ENST00000564574 PPP1R14DQ9NXH3 145 aa15.2■□□□□ 0.02
CLN3-212ENST00000564574 PRB4P10163 310 aaPredicted RBP15.19■□□□□ 0.02
CLN3-212ENST00000564574 NUTF2P61970 127 aaKnown RBP15.19■□□□□ 0.02
CLN3-212ENST00000564574 ERCC8Q13216 396 aa15.19■□□□□ 0.02
CLN3-212ENST00000564574 LINC00322Q6ZN03 302 aaPredicted RBP15.19■□□□□ 0.02
CLN3-212ENST00000564574 VGLL1Q99990 258 aa15.19■□□□□ 0.02
CLN3-212ENST00000564574 SMDT1Q9H4I9 107 aa15.19■□□□□ 0.02
CLN3-212ENST00000564574 KIR2DL5BA0A0G2JN68 375 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 KIR2DL5BA0A0G2JPC4 375 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 TRBV7-9A0A0J9YWB2 115 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 SCO2A0A1W2PP80 73 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 S100A9P06702 114 aaKnown RBP15.18■□□□□ 0.02
CLN3-212ENST00000564574 RPL35AP18077 110 aaKnown RBP15.18■□□□□ 0.02
CLN3-212ENST00000564574 AKR1C3P42330 323 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 ZNF138P52744 262 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 KIR2DL5AQ8N109 375 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 KIR2DL5BQ8NHK3 375 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 MED9Q9NWA0 146 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 ZNF492Q9P255 531 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 LENEPQ9Y5L5 61 aa15.18■□□□□ 0.02
CLN3-212ENST00000564574 RBMY1BA6NDE4 496 aaKnown RBP15.17■□□□□ 0.02
CLN3-212ENST00000564574 RBMY1EA6NEQ0 496 aaKnown RBP15.17■□□□□ 0.02
CLN3-212ENST00000564574 TMEM250H0YL14 139 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 IGKV3-20P01619 116 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 RBMY1DP0C7P1 496 aaKnown RBP15.17■□□□□ 0.02
CLN3-212ENST00000564574 APOC4P55056 127 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 PEA15Q15121 130 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 AMTNQ6UX39 209 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 C2CD4CQ8TF44 421 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 FMC1Q96HJ9 113 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 KLF12Q9Y4X4 402 aa15.17■□□□□ 0.02
CLN3-212ENST00000564574 TRBV6-1A0A0K0K1D8 114 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 RAB19A4D1S5 217 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 AMBPP02760 352 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 CT45A10P0DMU9 189 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 TSPOP30536 169 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 LEPP41159 167 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 UBE2G1P62253 170 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 FLI1Q01543 452 aaPredicted RBP15.16■□□□□ 0.02
CLN3-212ENST00000564574 TMEM183BQ1AE95 376 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 PSG8Q9UQ74 426 aa15.16■□□□□ 0.02
CLN3-212ENST00000564574 TRAV8-1A0A0A6YYK1 113 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 IGLV2-11P01706 119 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 FRMD6-AS1P0C7T7 363 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 DEFA6Q01524 100 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 DEFB121Q5J5C9 76 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 MRAPQ8TCY5 172 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 FAM19A4Q96LR4 140 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 NDFIP1Q9BT67 221 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 CSTL1Q9H114 145 aa15.15■□□□□ 0.02
CLN3-212ENST00000564574 UBE2CO00762 179 aa15.14■□□□□ 0.01
CLN3-212ENST00000564574 CRISP2P16562 243 aa15.14■□□□□ 0.01
CLN3-212ENST00000564574 TAS2R60P59551 318 aa15.14■□□□□ 0.01
CLN3-212ENST00000564574 LINC00479Q96M42 142 aa15.14■□□□□ 0.01
CLN3-212ENST00000564574 C1QTNF4Q9BXJ3 329 aa15.14■□□□□ 0.01
CLN3-212ENST00000564574 TRAV34A0A0B4J273 112 aa15.13■□□□□ 0.01
CLN3-212ENST00000564574 SRP19P09132 144 aaKnown RBP15.13■□□□□ 0.01
CLN3-212ENST00000564574 CDKN1BP46527 198 aa15.13■□□□□ 0.01
CLN3-212ENST00000564574 Q86TA4 180 aa15.13■□□□□ 0.01
CLN3-212ENST00000564574 Q8TAT8 98 aa15.13■□□□□ 0.01
CLN3-212ENST00000564574 SLC35B3Q9H1N7 401 aa15.13■□□□□ 0.01
CLN3-212ENST00000564574 LINC00862A6NCI5 91 aa15.12■□□□□ 0.01
CLN3-212ENST00000564574 SAPCD1Q5SSQ6 148 aa15.12■□□□□ 0.01
CLN3-212ENST00000564574 PRNTQ86SH4 94 aa15.12■□□□□ 0.01
CLN3-212ENST00000564574 SGK494Q96LW2 274 aa15.12■□□□□ 0.01
CLN3-212ENST00000564574 ZFP30Q9Y2G7 519 aa15.12■□□□□ 0.01
CLN3-212ENST00000564574 CA1P00915 261 aaPredicted RBP15.11■□□□□ 0.01
CLN3-212ENST00000564574 RPL35P42766 123 aaKnown RBP15.11■□□□□ 0.01
CLN3-212ENST00000564574 SPINK13Q1W4C9 94 aa15.11■□□□□ 0.01
CLN3-212ENST00000564574 M0R2Z0 102 aa15.1■□□□□ 0.01
CLN3-212ENST00000564574 SRSF3P84103 164 aaKnown RBP15.1■□□□□ 0.01
CLN3-212ENST00000564574 UQCC3Q6UW78 93 aa15.1■□□□□ 0.01
CLN3-212ENST00000564574 TREM1Q9NP99 234 aa15.1■□□□□ 0.01
CLN3-212ENST00000564574 KLLNB2CW77 178 aa15.09■□□□□ 0.01
CLN3-212ENST00000564574 LTAP01374 205 aa15.09■□□□□ 0.01
CLN3-212ENST00000564574 FXYD7P58549 80 aa15.09■□□□□ 0.01
CLN3-212ENST00000564574 ZFAND2AQ8N6M9 145 aa15.09■□□□□ 0.01
CLN3-212ENST00000564574 IGF2BP2-AS1Q96M15 143 aa15.09■□□□□ 0.01
CLN3-212ENST00000564574 DERL1Q9BUN8 251 aa15.09■□□□□ 0.01
CLN3-212ENST00000564574 PARLQ9H300 379 aa15.09■□□□□ 0.01
CLN3-212ENST00000564574 CRXO43186 299 aaPredicted RBP15.08■□□□□ 0
CLN3-212ENST00000564574 INSP01308 110 aa15.08■□□□□ 0
CLN3-212ENST00000564574 GPX1P07203 203 aa15.08■□□□□ 0
CLN3-212ENST00000564574 GIG44P09565 113 aaPredicted RBP15.08■□□□□ 0
CLN3-212ENST00000564574 COMMD7Q86VX2 200 aa15.08■□□□□ 0
CLN3-212ENST00000564574 EIF4E3Q8N5X7 224 aaKnown RBP15.08■□□□□ 0
CLN3-212ENST00000564574 TVP23CQ96ET8 276 aa15.08■□□□□ 0
CLN3-212ENST00000564574 C20orf144Q9BQM9 153 aa15.08■□□□□ 0
CLN3-212ENST00000564574 XCL2Q9UBD3 114 aa15.08■□□□□ 0
CLN3-212ENST00000564574 SMUG1Q53HV7 270 aa15.07■□□□□ 0
CLN3-212ENST00000564574 Q6ZWC4 215 aa15.07■□□□□ 0
CLN3-212ENST00000564574 COX8CQ7Z4L0 72 aa15.07■□□□□ 0
CLN3-212ENST00000564574 BAGE2Q86Y30 109 aa15.07■□□□□ 0
CLN3-212ENST00000564574 TMEM183AQ8IXX5 376 aa15.07■□□□□ 0
CLN3-212ENST00000564574 SMIM12Q96EX1 92 aa15.07■□□□□ 0
CLN3-212ENST00000564574 C7orf71A4D174 169 aa15.06■□□□□ 0
CLN3-212ENST00000564574 C9JCJ5 164 aa15.06■□□□□ 0
CLN3-212ENST00000564574 C9JQL5 133 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms