RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 RBAKDNA6NC62 111 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 HTN1P15515 57 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 ATP6V0CP27449 155 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 CDC34P49427 236 aaPredicted RBP9.56□□□□□ -0.88
CLK3-216ENST00000564468 RAB2AP61019 212 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 RANP62826 216 aaKnown RBP9.56□□□□□ -0.88
CLK3-216ENST00000564468 ERCC8Q13216 396 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 GFI1BQ5VTD9 330 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 TMEM263Q8WUH6 116 aaKnown RBP9.56□□□□□ -0.88
CLK3-216ENST00000564468 ZNF503Q96F45 646 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 PYGO2Q9BRQ0 406 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 AGPAT4-IT1Q9H0P7 198 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 Q9H3A6 140 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 APLNQ9ULZ1 77 aa9.56□□□□□ -0.88
CLK3-216ENST00000564468 TIMM8BQ9Y5J9 83 aaPredicted RBP9.56□□□□□ -0.88
CLK3-216ENST00000564468 IGHV4-4A0A075B6R2 117 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 TRBV7-9A0A0J9YWB2 115 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 RNF222A6NCQ9 220 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 TAAR5O14804 337 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 ARL6IP6Q8N6S5 226 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 CMTM2Q8TAZ6 248 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 NDUFAF3Q9BU61 184 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 ALMS1Q8TCU4 4167 aa9.55□□□□□ -0.88
CLK3-216ENST00000564468 PLECQ15149 4684 aaKnown RBP9.54□□□□□ -0.88
CLK3-216ENST00000564468 IGKV2-40A0A087WW87 121 aaPredicted RBP9.54□□□□□ -0.88
CLK3-216ENST00000564468 TRAV12-3A0A0B4J271 114 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 C7orf71A4D174 169 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 J3KRW8 73 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 IGKV2D-40P01614 121 aaPredicted RBP9.54□□□□□ -0.88
CLK3-216ENST00000564468 GPX1P07203 203 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 CRISP2P16562 243 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 AZU1P20160 251 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 FAM19A4Q96LR4 140 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 OTORQ9NRC9 128 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 ZNF492Q9P255 531 aa9.54□□□□□ -0.88
CLK3-216ENST00000564468 PGPA6NDG6 321 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 KLLNB2CW77 178 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 PRM2P04554 102 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 STAG3L2P0CL84 134 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 STAG3L3P0CL85 134 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 ZNF138P52744 262 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 KIR3DS1Q14943 382 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 RPL7L1Q6DKI1 246 aaKnown RBP9.53□□□□□ -0.88
CLK3-216ENST00000564468 RNASE8Q8TDE3 154 aaKnown RBP9.53□□□□□ -0.88
CLK3-216ENST00000564468 VGLL1Q99990 258 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 ACTR3CQ9C0K3 210 aaPredicted RBP9.53□□□□□ -0.88
CLK3-216ENST00000564468 LENEPQ9Y5L5 61 aa9.53□□□□□ -0.88
CLK3-216ENST00000564468 PLAC8L1A1L4L8 177 aa9.52□□□□□ -0.89
CLK3-216ENST00000564468 SNURFLB1AK76 121 aa9.52□□□□□ -0.89
CLK3-216ENST00000564468 ARPC5O15511 151 aa9.52□□□□□ -0.89
CLK3-216ENST00000564468 ARL14EPLP0DKL9 152 aa9.52□□□□□ -0.89
CLK3-216ENST00000564468 RAB24Q969Q5 203 aa9.52□□□□□ -0.89
CLK3-216ENST00000564468 CBY3A6NI87 242 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 DIRC3C9JPN6 131 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 G3V3Q6 166 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 HMGB3O15347 200 aaKnown RBP9.51□□□□□ -0.89
CLK3-216ENST00000564468 CXorf1O96002 111 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 DEFB130BP0DP73 79 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 DEFB130AP0DP74 79 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 HTN3P15516 51 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 RNASE4P34096 147 aaKnown RBP9.51□□□□□ -0.89
CLK3-216ENST00000564468 ZNF680Q8NEM1 530 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 TMED6Q8WW62 240 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 HYLS1Q96M11 299 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 LINC00467Q9BRT7 94 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 SH3BGRL3Q9H299 93 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 NOP10Q9NPE3 64 aaKnown RBP9.51□□□□□ -0.89
CLK3-216ENST00000564468 TMEM167BQ9NRX6 74 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 PLA2G2EQ9NZK7 142 aa9.51□□□□□ -0.89
CLK3-216ENST00000564468 FRAS1Q86XX4 4008 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 SERTM2A0A1B0GWG4 89 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 RGS13O14921 159 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 ZNF324O75467 553 aaPredicted RBP9.5□□□□□ -0.89
CLK3-216ENST00000564468 EIF3GO75821 320 aaKnown RBP eCLIP9.5□□□□□ -0.89
CLK3-216ENST00000564468 ATP5G1P05496 136 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 P0DMU3 169 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 FAM231AP0DMU4 169 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 FAM231CP0DMU5 169 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 ATP5G3P48201 142 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 BTN1A1Q13410 526 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 ZNF345Q14585 488 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 AKR1C8PQ5T2L2 129 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 EIF4E3Q8N5X7 224 aaKnown RBP9.5□□□□□ -0.89
CLK3-216ENST00000564468 ZFAND2AQ8N6M9 145 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 ST6GAL2Q96JF0 529 aa9.5□□□□□ -0.89
CLK3-216ENST00000564468 HMSDA8MTL9 139 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 K7EQM0 130 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 GCHFRP30047 84 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 CD300CQ08708 224 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 ANXA2RQ3ZCQ2 193 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 C15orf53Q8NAA6 179 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 SUN5Q8TC36 379 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 ARPC5LQ9BPX5 153 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 RPH3ALQ9UNE2 315 aa9.49□□□□□ -0.89
CLK3-216ENST00000564468 A0A0D9SG52 128 aa9.48□□□□□ -0.89
CLK3-216ENST00000564468 CTXND1A0A1B0GTU2 59 aa9.48□□□□□ -0.89
CLK3-216ENST00000564468 DAZ2Q13117 558 aaKnown RBP9.48□□□□□ -0.89
CLK3-216ENST00000564468 GOLT1AQ6ZVE7 132 aa9.48□□□□□ -0.89
CLK3-216ENST00000564468 KCNRGQ8N5I3 272 aa9.48□□□□□ -0.89
CLK3-216ENST00000564468 C5orf17Q8NAS9 161 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms