RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CT45A10P0DMU9 189 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 G6PCP35575 357 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 RPL13AP40429 203 aaKnown RBP3.03□□□□□ -1.92
VPS35-204ENST00000563884 LEPP41159 167 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 RND2P52198 227 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 HSPE1P61604 102 aaKnown RBP3.03□□□□□ -1.92
VPS35-204ENST00000563884 ELOBQ15370 118 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 HSD17B12Q53GQ0 312 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 SDIM1Q6ZPB5 146 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 H2BFWTQ7Z2G1 175 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 BPIFCQ8NFQ6 507 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 SPACA4Q8TDM5 124 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 CCDC90BQ9GZT6 254 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 SLC5A7Q9GZV3 580 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 PLGRKTQ9HBL7 147 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 CCL28Q9NRJ3 127 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 PRO0461Q9UI25 63 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 TMEM56-RWDD3S4R434 201 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 MUC17Q685J3 4493 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 IGLV1-50A0A075B6I6 118 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.02□□□□□ -1.93
VPS35-204ENST00000563884 IRGMA1A4Y4 181 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 G3V2T6 193 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 OR10J4P0C629 311 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 PTHLHP12272 177 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 HIST1H1DP16402 221 aaKnown RBP3.02□□□□□ -1.93
VPS35-204ENST00000563884 MYL12AP19105 171 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 S100GP29377 79 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 RPS11P62280 158 aaKnown RBP eCLIP3.02□□□□□ -1.93
VPS35-204ENST00000563884 Q0VG73 95 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 XAF1Q6GPH4 301 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 KCNIP4Q6PIL6 250 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 DEFB107AQ8IZN7 70 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 EIF4E3Q8N5X7 224 aaKnown RBP3.02□□□□□ -1.93
VPS35-204ENST00000563884 C11orf72Q8NBR9 251 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 OR4D5Q8NGN0 318 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 OR10G4Q8NGN3 311 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 GABARAPL3Q9BY60 117 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 JPT2Q9H910 190 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 C8orf4Q9NR00 106 aa3.02□□□□□ -1.93
VPS35-204ENST00000563884 MRPL36Q9P0J6 103 aaKnown RBP3.02□□□□□ -1.93
VPS35-204ENST00000563884 CRYM-AS1A6NIL9 109 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 SLC17A2O00624 439 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 PPYP01298 95 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 RNASE2P10153 161 aaKnown RBP3.01□□□□□ -1.93
VPS35-204ENST00000563884 HTR2BP41595 481 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 LPAR6P43657 344 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 UBE2D1P51668 147 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 LYZP61626 148 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 FGL1Q08830 312 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 PRSS54Q6PEW0 395 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 KRTAP5-5Q701N2 237 aaPredicted RBP3.01□□□□□ -1.93
VPS35-204ENST00000563884 AQP12AQ8IXF9 295 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 OR10R2Q8NGX6 335 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 RNASEH2CQ8TDP1 164 aaKnown RBP3.01□□□□□ -1.93
VPS35-204ENST00000563884 ODF3Q96PU9 254 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 PRADC1Q9BSG0 188 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 RSG1Q9BU20 258 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 OCR1Q9BZK8 76 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 GABARAPL1Q9H0R8 117 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 MRPL16Q9NX20 251 aaKnown RBP3.01□□□□□ -1.93
VPS35-204ENST00000563884 RAB22AQ9UL26 194 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 SSR3Q9UNL2 185 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 ORC6Q9Y5N6 252 aa3.01□□□□□ -1.93
VPS35-204ENST00000563884 TRAV12-3A0A0B4J271 114 aa3□□□□□ -1.93
VPS35-204ENST00000563884 PNMA8CA0A1B0GUJ8 204 aa3□□□□□ -1.93
VPS35-204ENST00000563884 PGPA6NDG6 321 aa3□□□□□ -1.93
VPS35-204ENST00000563884 METTL21EPA6NDL7 271 aa3□□□□□ -1.93
VPS35-204ENST00000563884 FKBP6O75344 327 aa3□□□□□ -1.93
VPS35-204ENST00000563884 CFDP00746 253 aaPredicted RBP3□□□□□ -1.93
VPS35-204ENST00000563884 CRPP02741 224 aa3□□□□□ -1.93
VPS35-204ENST00000563884 RLN1P04808 185 aa3□□□□□ -1.93
VPS35-204ENST00000563884 LIMS3P0CW19 117 aa3□□□□□ -1.93
VPS35-204ENST00000563884 LIMS4P0CW20 117 aa3□□□□□ -1.93
VPS35-204ENST00000563884 HRH1P35367 487 aa3□□□□□ -1.93
VPS35-204ENST00000563884 NDUFV3P56181 108 aaKnown RBP3□□□□□ -1.93
VPS35-204ENST00000563884 WNT4P56705 351 aa3□□□□□ -1.93
VPS35-204ENST00000563884 RAB31Q13636 194 aa3□□□□□ -1.93
VPS35-204ENST00000563884 TPRXLQ17RH7 258 aa3□□□□□ -1.93
VPS35-204ENST00000563884 ATRAIDQ6UW56 229 aa3□□□□□ -1.93
VPS35-204ENST00000563884 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3□□□□□ -1.93
VPS35-204ENST00000563884 ZNF818PQ6ZRF7 136 aa3□□□□□ -1.93
VPS35-204ENST00000563884 NRARPQ7Z6K4 114 aa3□□□□□ -1.93
VPS35-204ENST00000563884 DAZ4Q86SG3 579 aaKnown RBP3□□□□□ -1.93
VPS35-204ENST00000563884 C10orf67Q8IYJ2 551 aa3□□□□□ -1.93
VPS35-204ENST00000563884 RNF182Q8N6D2 247 aa3□□□□□ -1.93
VPS35-204ENST00000563884 FER1L6-AS1Q8NA97 138 aa3□□□□□ -1.93
VPS35-204ENST00000563884 OR52I1Q8NGK6 324 aa3□□□□□ -1.93
VPS35-204ENST00000563884 TYMSOSQ8TAI1 123 aa3□□□□□ -1.93
VPS35-204ENST00000563884 LRRC20Q8TCA0 184 aa3□□□□□ -1.93
VPS35-204ENST00000563884 CANT1Q8WVQ1 401 aa3□□□□□ -1.93
VPS35-204ENST00000563884 ATP6V1G3Q96LB4 118 aa3□□□□□ -1.93
VPS35-204ENST00000563884 CIB1Q99828 191 aa3□□□□□ -1.93
VPS35-204ENST00000563884 GTSF1LQ9H1H1 148 aa3□□□□□ -1.93
VPS35-204ENST00000563884 SLC25A22Q9H936 323 aa3□□□□□ -1.93
VPS35-204ENST00000563884 DIABLOQ9NR28 239 aa3□□□□□ -1.93
VPS35-204ENST00000563884 DAZ3Q9NR90 486 aaKnown RBP3□□□□□ -1.93
VPS35-204ENST00000563884 ANXA10Q9UJ72 324 aa3□□□□□ -1.93
VPS35-204ENST00000563884 PKIGQ9Y2B9 76 aa3□□□□□ -1.93
VPS35-204ENST00000563884 IGKV1D-8A0A087WSZ0 117 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms