RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 AMTNQ6UX39 209 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 C9orf47Q6ZRZ4 202 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 Q8TAT8 98 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 SGK494Q96LW2 274 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 LINC00479Q96M42 142 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 ASCL2Q99929 193 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 RAB19A4D1S5 217 aa12.21□□□□□ -0.45
VPS4A-202ENST00000562754 DUSP14O95147 198 aaKnown RBP12.21□□□□□ -0.45
VPS4A-202ENST00000562754 SRP19P09132 144 aaKnown RBP12.21□□□□□ -0.45
VPS4A-202ENST00000562754 RPL35AP18077 110 aaKnown RBP12.21□□□□□ -0.45
VPS4A-202ENST00000562754 AKR1C3P42330 323 aa12.21□□□□□ -0.45
VPS4A-202ENST00000562754 STHQ8IWL8 128 aa12.21□□□□□ -0.45
VPS4A-202ENST00000562754 TMEM75Q8N9X5 138 aa12.21□□□□□ -0.45
VPS4A-202ENST00000562754 OR4B1Q8NGF8 309 aa12.21□□□□□ -0.45
VPS4A-202ENST00000562754 DERL1Q9BUN8 251 aa12.21□□□□□ -0.45
VPS4A-202ENST00000562754 CT45A10P0DMU9 189 aa12.2□□□□□ -0.46
VPS4A-202ENST00000562754 COMMD7Q86VX2 200 aa12.2□□□□□ -0.46
VPS4A-202ENST00000562754 CLUHP3Q96NS8 147 aa12.2□□□□□ -0.46
VPS4A-202ENST00000562754 KLF12Q9Y4X4 402 aa12.2□□□□□ -0.46
VPS4A-202ENST00000562754 TMEM250H0YL14 139 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 K7EQM0 130 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 NDUFS6O75380 124 aaKnown RBP12.19□□□□□ -0.46
VPS4A-202ENST00000562754 ZNF138P52744 262 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 FLI1Q01543 452 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-202ENST00000562754 PEA15Q15121 130 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 TMEM78Q5T7P6 136 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 Q86TA4 180 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 FAM19A4Q96LR4 140 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 LINC00477Q96M19 166 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 SLC35B3Q9H1N7 401 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 ZNF492Q9P255 531 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 PSG8Q9UQ74 426 aa12.19□□□□□ -0.46
VPS4A-202ENST00000562754 A8MZ25 164 aa12.18□□□□□ -0.46
VPS4A-202ENST00000562754 TMEM183BQ1AE95 376 aa12.18□□□□□ -0.46
VPS4A-202ENST00000562754 LINC00322Q6ZN03 302 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-202ENST00000562754 TVP23CQ96ET8 276 aa12.18□□□□□ -0.46
VPS4A-202ENST00000562754 FMC1Q96HJ9 113 aa12.18□□□□□ -0.46
VPS4A-202ENST00000562754 TUBA4BQ9H853 241 aa12.18□□□□□ -0.46
VPS4A-202ENST00000562754 TRBV6-1A0A0K0K1D8 114 aa12.17□□□□□ -0.46
VPS4A-202ENST00000562754 RPL35P42766 123 aaKnown RBP12.17□□□□□ -0.46
VPS4A-202ENST00000562754 FXYD7P58549 80 aa12.17□□□□□ -0.46
VPS4A-202ENST00000562754 PRNTQ86SH4 94 aa12.17□□□□□ -0.46
VPS4A-202ENST00000562754 ODF3Q96PU9 254 aa12.17□□□□□ -0.46
VPS4A-202ENST00000562754 SMDT1Q9H4I9 107 aa12.17□□□□□ -0.46
VPS4A-202ENST00000562754 PPP1R14DQ9NXH3 145 aa12.17□□□□□ -0.46
VPS4A-202ENST00000562754 LOC102724200A0A096LPH7 203 aaPredicted RBP12.16□□□□□ -0.46
VPS4A-202ENST00000562754 FBLL1A6NHQ2 334 aaKnown RBP12.16□□□□□ -0.46
VPS4A-202ENST00000562754 M0R2Z0 102 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 GIG44P09565 113 aaPredicted RBP12.16□□□□□ -0.46
VPS4A-202ENST00000562754 CEBPGP53567 150 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 UBE2G1P62253 170 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 KIR3DS1Q14943 382 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 SPINK13Q1W4C9 94 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 PRR9Q5T870 116 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 ZFAND2AQ8N6M9 145 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 IGF2BP2-AS1Q96M15 143 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 PARLQ9H300 379 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 TREM1Q9NP99 234 aa12.16□□□□□ -0.46
VPS4A-202ENST00000562754 TRBV20OR9-2A0A075B6H5 130 aa12.15□□□□□ -0.46
VPS4A-202ENST00000562754 FRMD6-AS1P0C7T7 363 aa12.15□□□□□ -0.46
VPS4A-202ENST00000562754 CRISP2P16562 243 aa12.15□□□□□ -0.46
VPS4A-202ENST00000562754 C8orf49Q96NF6 230 aa12.15□□□□□ -0.46
VPS4A-202ENST00000562754 LENEPQ9Y5L5 61 aa12.15□□□□□ -0.46
VPS4A-202ENST00000562754 LTAP01374 205 aa12.14□□□□□ -0.47
VPS4A-202ENST00000562754 S100A9P06702 114 aaKnown RBP12.14□□□□□ -0.47
VPS4A-202ENST00000562754 LEPP41159 167 aa12.14□□□□□ -0.47
VPS4A-202ENST00000562754 TAS2R60P59551 318 aa12.14□□□□□ -0.47
VPS4A-202ENST00000562754 ZNF674Q2M3X9 581 aa12.14□□□□□ -0.47
VPS4A-202ENST00000562754 CENPWQ5EE01 88 aa12.14□□□□□ -0.47
VPS4A-202ENST00000562754 MORN3Q6PF18 240 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-202ENST00000562754 UQCC3Q6UW78 93 aa12.14□□□□□ -0.47
VPS4A-202ENST00000562754 EIF4E3Q8N5X7 224 aaKnown RBP12.14□□□□□ -0.47
VPS4A-202ENST00000562754 TRBV7-9A0A0J9YWB2 115 aa12.13□□□□□ -0.47
VPS4A-202ENST00000562754 KLLNB2CW77 178 aa12.13□□□□□ -0.47
VPS4A-202ENST00000562754 J3KRW8 73 aa12.13□□□□□ -0.47
VPS4A-202ENST00000562754 CRXO43186 299 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-202ENST00000562754 NHLRC2Q8NBF2 726 aa12.13□□□□□ -0.47
VPS4A-202ENST00000562754 NDFIP1Q9BT67 221 aa12.13□□□□□ -0.47
VPS4A-202ENST00000562754 XCL2Q9UBD3 114 aa12.13□□□□□ -0.47
VPS4A-202ENST00000562754 TRAV12-2A0A075B6T6 113 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 KIR2DL5BA0A0G2JN68 375 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 KIR2DL5BA0A0G2JPC4 375 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 CA1P00915 261 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-202ENST00000562754 IGLV2-8P01709 118 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 SFTA3P0C7M3 94 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 TSPOP30536 169 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 CDKN1BP46527 198 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 BTN1A1Q13410 526 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 GFI1BQ5VTD9 330 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 BAGE2Q86Y30 109 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 KIR2DL5AQ8N109 375 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 KIR2DL5BQ8NHK3 375 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 SMIM7Q9BQ49 75 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 CSTL1Q9H114 145 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 ZFP30Q9Y2G7 519 aa12.12□□□□□ -0.47
VPS4A-202ENST00000562754 PGPEP1LA6NFU8 196 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 C9JCJ5 164 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 RBMY1A1P0DJD3 496 aaKnown RBP12.11□□□□□ -0.47
VPS4A-202ENST00000562754 RBMY1CP0DJD4 496 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 GNG4P50150 75 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 299.6 ms