RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 OR8A1Q8NGG7 326 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 ZNF502Q8TBZ5 544 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 C1QTNF4Q9BXJ3 329 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 CPAMD8Q8IZJ3 1885 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 NPIPB6E9PJ23 425 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 LEPP41159 167 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 ASPHD1Q5U4P2 390 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 LINC00477Q96M19 166 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 RCHY1Q96PM5 261 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 FANCD2OSQ96PS1 177 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 GPR61Q9BZJ8 451 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 PHOX2AO14813 284 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 REC114Q7Z4M0 266 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 A0A1B0GUT8 65 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 CXorf65A6NEN9 183 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 TSTD3H0UI37 97 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 I3L2K1 104 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 TAS2R60P59551 318 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 CD300EQ496F6 205 aaPredicted RBP7.18□□□□□ -1.26
VPS39-205ENST00000562258 TMEM61Q8N0U2 210 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 OR10D4PQ8NGN7 298 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 MBD6Q96DN6 1003 aa7.18□□□□□ -1.26
VPS39-205ENST00000562258 MBD3L1Q8WWY6 194 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 INSP01308 110 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 HILS1P60008 231 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 AP1S3Q96PC3 154 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 PRR25Q96S07 402 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 ZFP30Q9Y2G7 519 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 CRLF1O75462 422 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 FSTL3O95633 263 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 C9orf66Q5T8R8 295 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 Q6ZN92 141 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 SSBP4Q9BWG4 385 aaPredicted RBP7.17□□□□□ -1.26
VPS39-205ENST00000562258 RPP21Q9H633 154 aaKnown RBP7.17□□□□□ -1.26
VPS39-205ENST00000562258 LINC00574Q9H8X3 128 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 ITPR1Q14643 2758 aa7.17□□□□□ -1.26
VPS39-205ENST00000562258 TGIF2-C20orf24A0A0A6YYL0 155 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 H3BUA1 57 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 ZNF705AQ6ZN79 300 aaPredicted RBP7.16□□□□□ -1.26
VPS39-205ENST00000562258 TMEM86BQ8N661 226 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 IMMP2LQ96T52 175 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 DEFB4AO15263 64 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 SPRY2O43597 315 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 CDX1P47902 265 aaPredicted RBP7.16□□□□□ -1.26
VPS39-205ENST00000562258 RPL23P62829 140 aaKnown RBP7.16□□□□□ -1.26
VPS39-205ENST00000562258 TMEM136Q6ZRR5 245 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 UBE2DNLQ8IWF7 75 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 OR4C5Q8NGB2 326 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 TMEM190Q8WZ59 177 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 TMEM18Q96B42 140 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 MS4A6AQ9H2W1 248 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 PRO1933Q9H354 126 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 TRBV19A0A075B6N1 114 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 IGHV3-16A0A0C4DH30 117 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 C2orf70A6NJV1 201 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 F5H768 121 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 TRGC2P03986 189 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 SRIP30626 198 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 PIFOQ8TCI5 191 aa7.16□□□□□ -1.26
VPS39-205ENST00000562258 ZNF48Q96MX3 618 aaPredicted RBP7.16□□□□□ -1.26
VPS39-205ENST00000562258 IGKV1OR2-108A0A075B7D4 117 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 VWC2LB2RUY7 222 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 NUDT3O95989 172 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 MORN5Q5VZ52 161 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 C18orf65Q6ZTR6 163 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 KIR2DL4Q99706 377 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 A0A087WWL8 130 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 GAGE12BA1L429 117 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 GAGE7O76087 117 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 GAGE12FP0CL80 117 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 GAGE12GP0CL81 117 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 GAGE12IP0CL82 117 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 IGLL1P15814 213 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 ADMP35318 185 aa7.15□□□□□ -1.26
VPS39-205ENST00000562258 APOHP02749 345 aaPredicted RBP7.15□□□□□ -1.27
VPS39-205ENST00000562258 ZNF876PQ49A33 203 aa7.15□□□□□ -1.27
VPS39-205ENST00000562258 FNDC10F2Z333 226 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 LY6LH3BQJ8 138 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 IGHG4P01861 327 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 C18orf15Q96N68 181 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 VGLL1Q99990 258 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 MRPL18Q9H0U6 180 aaKnown RBP7.14□□□□□ -1.27
VPS39-205ENST00000562258 ESM1Q9NQ30 184 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 MYCNOSP40205 109 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 C1orf194Q5T5A4 169 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 C14orf178Q8N769 122 aaPredicted RBP7.14□□□□□ -1.27
VPS39-205ENST00000562258 TMEM75Q8N9X5 138 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 NUDT10Q8NFP7 164 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 MYOZ3Q8TDC0 251 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 NUDT11Q96G61 164 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 ZMAT4Q9H898 229 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 TET2Q6N021 2002 aaPredicted RBP7.14□□□□□ -1.27
VPS39-205ENST00000562258 TRGV11A0A075B6L2 103 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 HBBP68871 147 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 CHCHD5Q9BSY4 110 aa7.14□□□□□ -1.27
VPS39-205ENST00000562258 A0A096LPF7 62 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 H3BRN7 92 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 CRYGCP07315 174 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 IL15RAQ13261 267 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 OXLD1Q5BKU9 147 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms