RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IQCJQ1A5X6 159 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 LCE2AQ5TA79 106 aaPredicted RBP5.75□□□□□ -1.49
VPS39-204ENST00000561818 ZNF493Q6ZR52 646 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 BCL6BQ8N143 479 aaPredicted RBP5.75□□□□□ -1.49
VPS39-204ENST00000561818 KLHDC1Q8N7A1 406 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 FER1L6-AS1Q8NA97 138 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 NHLRC2Q8NBF2 726 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 WFDC11Q8NEX6 87 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 CHCHD1Q96BP2 118 aaKnown RBP5.75□□□□□ -1.49
VPS39-204ENST00000561818 ZC2HC1AQ96GY0 325 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 KCNS1Q96KK3 526 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 SIGLEC8Q9NYZ4 499 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 CHD6Q8TD26 2715 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 IGKV2-40A0A087WW87 121 aaPredicted RBP5.74□□□□□ -1.49
VPS39-204ENST00000561818 TRAV8-1A0A0A6YYK1 113 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 DNAJC9-AS1A6NH13 148 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 SOCS3O14543 225 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 SH2D1AO60880 128 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 IGKV2D-40P01614 121 aaPredicted RBP5.74□□□□□ -1.49
VPS39-204ENST00000561818 IGHV3-11P01762 117 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 TM4SF20Q53R12 229 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 MRPL54Q6P161 138 aaKnown RBP5.74□□□□□ -1.49
VPS39-204ENST00000561818 EBLN2Q6P2I7 272 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 IL17RELQ6ZVW7 336 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 TCF24Q7RTU0 167 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 APRG1Q8IVJ8 170 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 C17orf77Q96MU5 243 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 C12orf57Q99622 126 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 SAMD10Q9BYL1 202 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 KLK15Q9H2R5 256 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 YAE1D1Q9NRH1 226 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 LINC00527Q9UJ94 153 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 TACC2O95359 2948 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 CR1P17927 2039 aa5.74□□□□□ -1.49
VPS39-204ENST00000561818 CSPG4Q6UVK1 2322 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 IGHV3-35A0A0C4DH35 117 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 LINC01549A6NIU2 74 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 H3BTX0 84 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 AMBPP02760 352 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 HOXD3P31249 432 aaPredicted RBP5.73□□□□□ -1.49
VPS39-204ENST00000561818 TCL1AP56279 114 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 HILS1P60008 231 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 PSMG4Q5JS54 123 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 UNQ9165/PRO28630Q6UXU0 137 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 OR8A1Q8NGG7 326 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 OR2K2Q8NGT1 345 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 HIST1H2BLQ99880 126 aa5.73□□□□□ -1.49
VPS39-204ENST00000561818 TSSC4Q9Y5U2 329 aaPredicted RBP5.73□□□□□ -1.49
VPS39-204ENST00000561818 C20orf202A1L168 122 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 TMEM213A2RRL7 107 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 OR4C46A6NHA9 309 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 K7EMI3 77 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 ORM1P02763 201 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 RPLP1P05386 114 aaKnown RBP5.72□□□□□ -1.49
VPS39-204ENST00000561818 FABP4P15090 132 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 G0S2P27469 103 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 SRIP30626 198 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 JOSD1Q15040 202 aaPredicted RBP5.72□□□□□ -1.49
VPS39-204ENST00000561818 FOXI2Q6ZQN5 318 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 ORMDL3Q8N138 153 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 MAPK1IP1LQ8NDC0 245 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 DYNLRB2Q8TF09 96 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 PGLYRP4Q96LB8 373 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 CLUHP3Q96NS8 147 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 SPAG8Q99932 426 aaPredicted RBP5.72□□□□□ -1.49
VPS39-204ENST00000561818 C20orf144Q9BQM9 153 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 TMEM191AQ9H0A3 160 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 ABCA12Q86UK0 2595 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 DOPEY2Q9Y3R5 2298 aa5.72□□□□□ -1.49
VPS39-204ENST00000561818 IGHV4-4A0A075B6R2 117 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 LOC102724200A0A096LPH7 203 aaPredicted RBP5.71□□□□□ -1.5
VPS39-204ENST00000561818 TRAV8-2A0A0B4J237 113 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 C2orf70A6NJV1 201 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 TSTD3H0UI37 97 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 SMAD7O15105 426 aaKnown RBP5.71□□□□□ -1.5
VPS39-204ENST00000561818 ZNF324O75467 553 aaPredicted RBP5.71□□□□□ -1.5
VPS39-204ENST00000561818 HSBP1O75506 76 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 CA1P00915 261 aaPredicted RBP5.71□□□□□ -1.5
VPS39-204ENST00000561818 TRBV12-3P01733 135 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 GPX1P07203 203 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 IGLC6P0CF74 106 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 ASIPP42127 132 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 CAMPP49913 170 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 OR10D4PQ8NGN7 298 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 OR9G4Q8NGQ1 327 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 OR1N2Q8NGR9 330 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 DCANP1Q8TF63 244 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 GTSF1Q8WW33 167 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 VGLL1Q99990 258 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 FAM110AQ9BQ89 295 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 NDUFAF3Q9BU61 184 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 AGPAT4-IT1Q9H0P7 198 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 HSPB8Q9UJY1 196 aa5.71□□□□□ -1.5
VPS39-204ENST00000561818 APCP25054 2843 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 FAM181BA6NEQ2 426 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 K7EQG2 157 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 SNAI2O43623 268 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 ZNF207O43670 478 aaKnown RBP5.7□□□□□ -1.5
VPS39-204ENST00000561818 APOHP02749 345 aaPredicted RBP5.7□□□□□ -1.5
VPS39-204ENST00000561818 SNRPCP09234 159 aaKnown RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms