RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MIC13Q5XKP0 118 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 LYPD5Q6UWN5 251 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 NFE4Q86UQ8 179 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 OR1L4Q8NGR5 311 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 SDHCQ99643 169 aaPredicted RBP11.17□□□□□ -0.62
CLN3-208ENST00000561505 VGLL1Q99990 258 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 PRO0255Q9UI72 69 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 ICOSQ9Y6W8 199 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 SRRM2Q9UQ35 2752 aaKnown RBP11.17□□□□□ -0.62
CLN3-208ENST00000561505 A0A087WTM6 91 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 J3KRW8 73 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 SCGB1D2O95969 90 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 CRYBA4P53673 196 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 ERCC8Q13216 396 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 FHL2Q14192 279 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 C12orf45Q8N5I9 185 aaPredicted RBP11.16□□□□□ -0.62
CLN3-208ENST00000561505 ZFAND2AQ8N6M9 145 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 GSKIPQ9P0R6 139 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 TNFRSF18Q9Y5U5 241 aa11.16□□□□□ -0.62
CLN3-208ENST00000561505 TRGV1A0A0A0MS02 117 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 EREGO14944 169 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 PAX4O43316 350 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 MPDU1O75352 247 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 HIST1H1EP10412 219 aaKnown RBP11.15□□□□□ -0.62
CLN3-208ENST00000561505 KRTAP10-1P60331 282 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 IL15RAQ13261 267 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 BTN1A1Q13410 526 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 SPANXN2Q5MJ10 180 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 IQCF2Q8IXL9 164 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 RBM38Q9H0Z9 239 aaKnown RBP11.15□□□□□ -0.62
CLN3-208ENST00000561505 SLC39A9Q9NUM3 307 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 PTTG2Q9NZH5 202 aa11.15□□□□□ -0.62
CLN3-208ENST00000561505 TRBV7-9A0A0J9YWB2 115 aa11.14□□□□□ -0.63
CLN3-208ENST00000561505 MRPL23Q16540 153 aaKnown RBP11.14□□□□□ -0.63
CLN3-208ENST00000561505 UQCC1Q9NVA1 299 aa11.14□□□□□ -0.63
CLN3-208ENST00000561505 HHLA3Q9XRX5 114 aa11.14□□□□□ -0.63
CLN3-208ENST00000561505 Q5VSD8 79 aa11.13□□□□□ -0.63
CLN3-208ENST00000561505 MRPL32Q9BYC8 188 aaKnown RBP11.13□□□□□ -0.63
CLN3-208ENST00000561505 C20orf85Q9H1P6 137 aa11.13□□□□□ -0.63
CLN3-208ENST00000561505 FAM24AA6NFZ4 105 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 L7N2F9 121 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 CST7O76096 145 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 S100A11P31949 105 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 RNASE4P34096 147 aaKnown RBP11.12□□□□□ -0.63
CLN3-208ENST00000561505 FUSP35637 526 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLN3-208ENST00000561505 VAMP2P63027 116 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 PRR9Q5T870 116 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 NEGR1Q7Z3B1 354 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 ZNF492Q9P255 531 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 TP53TG3Q9ULZ0 132 aa11.12□□□□□ -0.63
CLN3-208ENST00000561505 IGHV1OR15-1A0A075B7D0 117 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 TRAV9-2A0A087WT02 112 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 GPX1P07203 203 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 DNAH10OSP0CZ25 163 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 SULT1A1P50225 295 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 TRIQKQ629K1 86 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 Q6ZQT7 251 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 FRZBQ92765 325 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 FAM167A-AS1Q96KT0 104 aa11.11□□□□□ -0.63
CLN3-208ENST00000561505 LYRM2Q9NU23 88 aaPredicted RBP11.11□□□□□ -0.63
CLN3-208ENST00000561505 CENPXA8MT69 81 aa11.1□□□□□ -0.63
CLN3-208ENST00000561505 PRAF2O60831 178 aa11.1□□□□□ -0.63
CLN3-208ENST00000561505 INPP1P49441 399 aa11.1□□□□□ -0.63
CLN3-208ENST00000561505 ATP6V1FQ16864 119 aa11.1□□□□□ -0.63
CLN3-208ENST00000561505 EXOC3-AS1Q8N2X6 119 aa11.1□□□□□ -0.63
CLN3-208ENST00000561505 TMEM252Q8N6L7 170 aa11.1□□□□□ -0.63
CLN3-208ENST00000561505 MRPL16Q9NX20 251 aaKnown RBP11.1□□□□□ -0.63
CLN3-208ENST00000561505 LY96Q9Y6Y9 160 aa11.1□□□□□ -0.63
CLN3-208ENST00000561505 CCSO14618 274 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 PLA2G10O15496 165 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 PYYP10082 97 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 IL7P13232 177 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 CAV2P51636 162 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 ICAM4Q14773 271 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 ZNF846Q147U1 533 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 OR10G4Q8NGN3 311 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 RASL10AQ92737 203 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 C2orf50Q96LR7 162 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 C8orf49Q96NF6 230 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 MSRB1Q9NZV6 116 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 LSM5Q9Y4Y9 91 aaKnown RBP11.09□□□□□ -0.63
CLN3-208ENST00000561505 TIMM9Q9Y5J7 89 aa11.09□□□□□ -0.63
CLN3-208ENST00000561505 FLG2Q5D862 2391 aaPredicted RBP11.08□□□□□ -0.64
CLN3-208ENST00000561505 IGSF23A1L1A6 192 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 K7EQD1 137 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 RGS13O14921 159 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 IFNA5P01569 189 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 BCAP31P51572 246 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 TMEM78Q5T7P6 136 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 SLC25A2Q9BXI2 301 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 AAMDCQ9H7C9 122 aa11.08□□□□□ -0.64
CLN3-208ENST00000561505 IGKV2-40A0A087WW87 121 aaPredicted RBP11.07□□□□□ -0.64
CLN3-208ENST00000561505 IGKV2D-40P01614 121 aaPredicted RBP11.07□□□□□ -0.64
CLN3-208ENST00000561505 IGHV3-53P01767 116 aa11.07□□□□□ -0.64
CLN3-208ENST00000561505 NBEAP1P0C6P0 100 aa11.07□□□□□ -0.64
CLN3-208ENST00000561505 GCSHP23434 173 aa11.07□□□□□ -0.64
CLN3-208ENST00000561505 ZNF138P52744 262 aa11.07□□□□□ -0.64
CLN3-208ENST00000561505 ZNF266Q14584 549 aa11.07□□□□□ -0.64
CLN3-208ENST00000561505 WFDC10BQ8IUB3 73 aa11.07□□□□□ -0.64
CLN3-208ENST00000561505 DNAH8Q96JB1 4490 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms