RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 DPPA3Q6W0C5 159 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 VGLL1Q99990 258 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 TRAPPC1Q9Y5R8 145 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 ZFHX3Q15911 3703 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 SVEP1Q4LDE5 3571 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 P0C879 139 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 TSPOP30536 169 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 RNASEKQ6P5S7 137 aaKnown RBP4.19□□□□□ -1.74
VPS13C-209ENST00000560637 FAM210BQ96KR6 192 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 IMMP2LQ96T52 175 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 SRSF8Q9BRL6 282 aaKnown RBP4.19□□□□□ -1.74
VPS13C-209ENST00000560637 SLC50A1Q9BRV3 221 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 ATG101Q9BSB4 218 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 SSBP4Q9BWG4 385 aaPredicted RBP4.19□□□□□ -1.74
VPS13C-209ENST00000560637 SLC25A2Q9BXI2 301 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 OTORQ9NRC9 128 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 CSMD2Q7Z408 3487 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 CELSR1Q9NYQ6 3014 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 AGRNO00468 2067 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 C2orf70A6NJV1 201 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 CYSRT1A8MQ03 144 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 IGHG4P01861 327 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 GP9P14770 177 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF506Q5JVG8 444 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 HIST1H2BAQ96A08 127 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 C8orf49Q96NF6 230 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 GPR82Q96P67 336 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 MS4A6AQ9H2W1 248 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PLA2G2EQ9NZK7 142 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 ARL2-SNX15V9GYD0 113 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 SPENQ96T58 3664 aaKnown RBP4.18□□□□□ -1.74
VPS13C-209ENST00000560637 TGIF2-C20orf24A0A0A6YYL0 155 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 A8MWL6 223 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PRAC2D3DTV9 90 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 EGR2P11161 476 aaPredicted RBP4.18□□□□□ -1.74
VPS13C-209ENST00000560637 MEOX2P50222 304 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PRR20EP86478 221 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PRR20CP86479 221 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PRR20DP86480 221 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PRR20BP86481 221 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PRR20AP86496 221 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PSG3Q16557 428 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 UQCC3Q6UW78 93 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 WIPF2Q8TF74 440 aaPredicted RBP4.18□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM190Q8WZ59 177 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 DMRT1Q9Y5R6 373 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 NBEAL2Q6ZNJ1 2754 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 TRGV1A0A0A0MS02 117 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 IGHV3-16A0A0C4DH30 117 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 A0A1W2PRE2 83 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 LINC00862A6NCI5 91 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 CRYGCP07315 174 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 CRYGBP07316 175 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 EBI3Q14213 229 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 KRTAP21-3Q3LHN1 58 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 DEFB125Q8N687 156 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 Q8N6K4 173 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 PRSS3P2Q8NHM4 247 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 TXN2Q99757 166 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 SEC11CQ9BY50 192 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 ZMAT4Q9H898 229 aa4.18□□□□□ -1.74
VPS13C-209ENST00000560637 TRBV19A0A075B6N1 114 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 IGKV1D-37A0A075B6S9 117 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 RNASE1P07998 156 aaKnown RBP4.17□□□□□ -1.74
VPS13C-209ENST00000560637 SAPCD1Q5SSQ6 148 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 C9orf139Q6ZV77 190 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 SFRP2Q96HF1 295 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 MRPL27Q9P0M9 148 aaKnown RBP4.17□□□□□ -1.74
VPS13C-209ENST00000560637 LSM4Q9Y4Z0 139 aaKnown RBP4.17□□□□□ -1.74
VPS13C-209ENST00000560637 CUBNO60494 3623 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 HIGD1CA8MV81 97 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 H3BRN7 92 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 BUB3O43684 328 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 IGF1P05019 195 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 RAB5AP20339 215 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 CDX1P47902 265 aaPredicted RBP4.17□□□□□ -1.74
VPS13C-209ENST00000560637 RPL23P62829 140 aaKnown RBP4.17□□□□□ -1.74
VPS13C-209ENST00000560637 MBD3L1Q8WWY6 194 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 A0A087WWL8 130 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 A0A096LPF7 62 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 FABP5P3A8MUU1 101 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM250H0YL14 139 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF253O75346 499 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 HSBP1O75506 76 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF138P52744 262 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 DEFB135Q30KP9 77 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 DGAT2L7PQ6IED9 249 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF114Q8NC26 417 aa4.17□□□□□ -1.74
VPS13C-209ENST00000560637 PRM2P04554 102 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 ASIPP42127 132 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 PNRC1Q12796 327 aaPredicted RBP4.16□□□□□ -1.74
VPS13C-209ENST00000560637 THAP8Q8NA92 274 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 OR8A1Q8NGG7 326 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 FXYD5Q96DB9 178 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 FAM110AQ9BQ89 295 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF256Q9Y2P7 627 aaPredicted RBP4.16□□□□□ -1.74
VPS13C-209ENST00000560637 NBPF19A0A087WUL8 3843 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 CKS2P33552 79 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 FA2HQ7L5A8 372 aa4.16□□□□□ -1.74
VPS13C-209ENST00000560637 KRTAP1-3Q8IUG1 177 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms