RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PGPA6NDG6 321 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 DIRC3C9JPN6 131 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 HBE1P02100 147 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 CT45A10P0DMU9 189 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 CRISP2P16562 243 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 RAB5CP51148 216 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 C9orf62Q8N4C0 152 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 C5orf17Q8NAS9 161 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 FAM19A4Q96LR4 140 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 NKX6-2Q9C056 277 aaPredicted RBP9.4□□□□□ -0.9
NEDD8-208ENST00000560427 MAP1LC3BQ9GZQ8 125 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 AGPAT4-IT1Q9H0P7 198 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 LENEPQ9Y5L5 61 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 IGKV2-40A0A087WW87 121 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-208ENST00000560427 TEX48A0A1B0GUV7 120 aa9.39□□□□□ -0.91
NEDD8-208ENST00000560427 IGKV2D-40P01614 121 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-208ENST00000560427 ZNF138P52744 262 aa9.39□□□□□ -0.91
NEDD8-208ENST00000560427 RRN3P1Q2M238 152 aa9.39□□□□□ -0.91
NEDD8-208ENST00000560427 IQCF2Q8IXL9 164 aa9.39□□□□□ -0.91
NEDD8-208ENST00000560427 ZNF492Q9P255 531 aa9.39□□□□□ -0.91
NEDD8-208ENST00000560427 ARL2-SNX15V9GYD0 113 aa9.39□□□□□ -0.91
NEDD8-208ENST00000560427 TRAV12-2A0A075B6T6 113 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 IGHV3OR16-12A0A075B7B8 117 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 KLLNB2CW77 178 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 H7BYZ3 331 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 RBMY1A1P0DJD3 496 aaKnown RBP9.38□□□□□ -0.91
NEDD8-208ENST00000560427 RBMY1CP0DJD4 496 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 TAS2R60P59551 318 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 CD300CQ08708 224 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 ERCC8Q13216 396 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 RBMY1FQ15415 496 aaKnown RBP9.38□□□□□ -0.91
NEDD8-208ENST00000560427 GFI1BQ5VTD9 330 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 FAM213BQ8TBF2 198 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 MBD3L1Q8WWY6 194 aa9.38□□□□□ -0.91
NEDD8-208ENST00000560427 FBLL1A6NHQ2 334 aaKnown RBP9.37□□□□□ -0.91
NEDD8-208ENST00000560427 GGTLC3B5MD39 225 aa9.37□□□□□ -0.91
NEDD8-208ENST00000560427 K7EQM0 130 aa9.37□□□□□ -0.91
NEDD8-208ENST00000560427 PRB4P10163 310 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-208ENST00000560427 C11orf45Q8TAV5 145 aa9.37□□□□□ -0.91
NEDD8-208ENST00000560427 VGLL1Q99990 258 aa9.37□□□□□ -0.91
NEDD8-208ENST00000560427 TCEAL7Q9BRU2 100 aa9.37□□□□□ -0.91
NEDD8-208ENST00000560427 LOC102723971A0A1B0GUV8 181 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 C7orf71A4D174 169 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 TCRAP04437 139 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 FHITP49789 147 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 PPT1P50897 306 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 FGF8P55075 233 aaPredicted RBP9.36□□□□□ -0.91
NEDD8-208ENST00000560427 CASC10Q5T4H9 136 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 GOLT1AQ6ZVE7 132 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 ZFAND2AQ8N6M9 145 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 SFT2D1Q8WV19 159 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 LINC01587Q99440 93 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 PYGO2Q9BRQ0 406 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 NIPSNAP3BQ9BS92 247 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 ATG101Q9BSB4 218 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 PLA2G2EQ9NZK7 142 aa9.36□□□□□ -0.91
NEDD8-208ENST00000560427 DNAH7Q8WXX0 4024 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 NUPR2A6NF83 97 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 TEX46H3BTG2 121 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 DEFB4AO15263 64 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 GPX1P07203 203 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 H2AFB1P0C5Y9 115 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 SULT1A2P50226 295 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 SUMO1P63165 101 aaKnown RBP9.35□□□□□ -0.91
NEDD8-208ENST00000560427 ZNF493Q6ZR52 646 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 CYB561D1Q8N8Q1 229 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 LINC00467Q9BRT7 94 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 TMPRSS5Q9H3S3 457 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 EPDR1Q9UM22 224 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 RPH3ALQ9UNE2 315 aa9.35□□□□□ -0.91
NEDD8-208ENST00000560427 YTHDF2Q9Y5A9 579 aaKnown RBP9.35□□□□□ -0.91
NEDD8-208ENST00000560427 TRAV1-1A0A0B4J248 108 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 CXorf65A6NEN9 183 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 FAM74A7A6NL05 159 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 SPART-AS1P0CW21 52 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 GNG5P63218 68 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 TMEM75Q8N9X5 138 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 Q8TAT8 98 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 TMEM263Q8WUH6 116 aaKnown RBP9.34□□□□□ -0.91
NEDD8-208ENST00000560427 HIST1H2BAQ96A08 127 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 C16orf74Q96GX8 76 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 NDFIP1Q9BT67 221 aa9.34□□□□□ -0.91
NEDD8-208ENST00000560427 C11orf94C9JXX5 98 aa9.33□□□□□ -0.92
NEDD8-208ENST00000560427 UBE2G2P60604 165 aa9.33□□□□□ -0.92
NEDD8-208ENST00000560427 KIR3DS1Q14943 382 aa9.33□□□□□ -0.92
NEDD8-208ENST00000560427 CCDC28AQ8IWP9 274 aa9.33□□□□□ -0.92
NEDD8-208ENST00000560427 RNASE8Q8TDE3 154 aaKnown RBP9.33□□□□□ -0.92
NEDD8-208ENST00000560427 DKK2Q9UBU2 259 aa9.33□□□□□ -0.92
NEDD8-208ENST00000560427 TRAV12-3A0A0B4J271 114 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 LYRM9A8MSI8 78 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 ZNF705GA8MUZ8 300 aaPredicted RBP9.32□□□□□ -0.92
NEDD8-208ENST00000560427 F6UZH7 168 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 J3KRW8 73 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 ZNF324O75467 553 aaPredicted RBP9.32□□□□□ -0.92
NEDD8-208ENST00000560427 IFNA7P01567 189 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 NANOS2P60321 138 aaKnown RBP9.32□□□□□ -0.92
NEDD8-208ENST00000560427 BTN1A1Q13410 526 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 Q6AWC8 147 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 ZFAND6Q6FIF0 208 aa9.32□□□□□ -0.92
NEDD8-208ENST00000560427 ZNF680Q8NEM1 530 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms