RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 RPL29P47914 159 aaKnown RBP8.04□□□□□ -1.12
USP3-214ENST00000559718 S100A10P60903 97 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 GUK1Q16774 197 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 CDPF1Q6NVV7 123 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 SPATA12Q7Z6I5 190 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 OR1L4Q8NGR5 311 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 ZNF503Q96F45 646 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 C2orf50Q96LR7 162 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 ODF3Q96PU9 254 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 PYGO2Q9BRQ0 406 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 GSN-AS1Q9NRJ2 163 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 APOBP04114 4563 aaKnown RBP8.04□□□□□ -1.12
USP3-214ENST00000559718 TRBV19A0A075B6N1 114 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 ZNF253O75346 499 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 PYYP10082 97 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 SULT1A1P50225 295 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 BAXQ07812 192 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 CD300CQ08708 224 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 DAZ2Q13117 558 aaKnown RBP8.03□□□□□ -1.12
USP3-214ENST00000559718 IL15RAQ13261 267 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 BTN1A1Q13410 526 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 RAB32Q13637 225 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 GCSAMLQ5JQS6 135 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 C12orf45Q8N5I9 185 aaPredicted RBP8.03□□□□□ -1.12
USP3-214ENST00000559718 TMEM252Q8N6L7 170 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 C11orf72Q8NBR9 251 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 VSIG2Q96IQ7 327 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 PFDN5Q99471 154 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 UPK3BQ9BT76 320 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 AGPAT4-IT1Q9H0P7 198 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 Q9H3A6 140 aa8.03□□□□□ -1.12
USP3-214ENST00000559718 LYRM2Q9NU23 88 aaPredicted RBP8.03□□□□□ -1.12
USP3-214ENST00000559718 C7orf71A4D174 169 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 KLLNB2CW77 178 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 ZNF324O75467 553 aaPredicted RBP8.02□□□□□ -1.13
USP3-214ENST00000559718 SLC25A5P05141 298 aaKnown RBP8.02□□□□□ -1.13
USP3-214ENST00000559718 FGF7P21781 194 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 S100A11P31949 105 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 KRTAP10-2P60368 255 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 Q6ZQT7 251 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 EXOC3-AS1Q8N2X6 119 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 MAPKAPK5-AS1Q8N8E1 139 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 BLNKQ8WV28 456 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 MRPL53Q96EL3 112 aaKnown RBP8.02□□□□□ -1.13
USP3-214ENST00000559718 FAM19A4Q96LR4 140 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 KRTAP9-9Q9BYP9 154 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 KRTAP9-4Q9BYQ2 154 aa8.02□□□□□ -1.13
USP3-214ENST00000559718 MRPS16Q9Y3D3 137 aaKnown RBP8.02□□□□□ -1.13
USP3-214ENST00000559718 TRGV2A0A075B6R0 118 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 IGKV2-40A0A087WW87 121 aaPredicted RBP8.01□□□□□ -1.13
USP3-214ENST00000559718 A0A096LPF7 62 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 TRGV1A0A0A0MS02 117 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 H3BNG1 76 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 IGKV2D-40P01614 121 aaPredicted RBP8.01□□□□□ -1.13
USP3-214ENST00000559718 HIST1H1EP10412 219 aaKnown RBP8.01□□□□□ -1.13
USP3-214ENST00000559718 PVALBP20472 110 aaPredicted RBP8.01□□□□□ -1.13
USP3-214ENST00000559718 RNASE4P34096 147 aaKnown RBP8.01□□□□□ -1.13
USP3-214ENST00000559718 TTC32Q5I0X7 151 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 CHAC2Q8WUX2 184 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 TMEM14CQ9P0S9 112 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 KLF12Q9Y4X4 402 aa8.01□□□□□ -1.13
USP3-214ENST00000559718 DNAH5Q8TE73 4624 aa8□□□□□ -1.13
USP3-214ENST00000559718 HBG1P69891 147 aa8□□□□□ -1.13
USP3-214ENST00000559718 HBG2P69892 147 aa8□□□□□ -1.13
USP3-214ENST00000559718 PRR9Q5T870 116 aa8□□□□□ -1.13
USP3-214ENST00000559718 STX12Q86Y82 276 aa8□□□□□ -1.13
USP3-214ENST00000559718 ZFAND2AQ8N6M9 145 aa8□□□□□ -1.13
USP3-214ENST00000559718 THAP6Q8TBB0 222 aa8□□□□□ -1.13
USP3-214ENST00000559718 LINC00477Q96M19 166 aa8□□□□□ -1.13
USP3-214ENST00000559718 VGLL1Q99990 258 aa8□□□□□ -1.13
USP3-214ENST00000559718 SLC25A2Q9BXI2 301 aa8□□□□□ -1.13
USP3-214ENST00000559718 NPCDR1Q9BY65 106 aa8□□□□□ -1.13
USP3-214ENST00000559718 GPN1Q9HCN4 374 aaPredicted RBP8□□□□□ -1.13
USP3-214ENST00000559718 TP53TG3Q9ULZ0 132 aa8□□□□□ -1.13
USP3-214ENST00000559718 FUT9Q9Y231 359 aa8□□□□□ -1.13
USP3-214ENST00000559718 TIMM9Q9Y5J7 89 aa8□□□□□ -1.13
USP3-214ENST00000559718 A0A1W2PPQ1 181 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 SPINK4O60575 86 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 IGHV3-53P01767 116 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 NHLH2Q02577 135 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 PDE6HQ13956 83 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 ICAM4Q14773 271 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 ANXA2RQ3ZCQ2 193 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 FAM122CQ6P4D5 195 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 MIR17HGQ75NE6 70 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 EIF4E3Q8N5X7 224 aaKnown RBP7.99□□□□□ -1.13
USP3-214ENST00000559718 ZNF680Q8NEM1 530 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 FAM167A-AS1Q96KT0 104 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 C18orf15Q96N68 181 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 LINC00467Q9BRT7 94 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 PRELID1Q9Y255 219 aa7.99□□□□□ -1.13
USP3-214ENST00000559718 MPDU1O75352 247 aa7.98□□□□□ -1.13
USP3-214ENST00000559718 SIX6O95475 246 aa7.98□□□□□ -1.13
USP3-214ENST00000559718 GPX1P07203 203 aa7.98□□□□□ -1.13
USP3-214ENST00000559718 CRISP2P16562 243 aa7.98□□□□□ -1.13
USP3-214ENST00000559718 FUSP35637 526 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP3-214ENST00000559718 TCL1AP56279 114 aa7.98□□□□□ -1.13
USP3-214ENST00000559718 LINC00315P59091 139 aa7.98□□□□□ -1.13
USP3-214ENST00000559718 ATP6V1FQ16864 119 aa7.98□□□□□ -1.13
USP3-214ENST00000559718 C9orf47Q6ZRZ4 202 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms