RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SOX21Q9Y651 276 aaPredicted RBP9.65□□□□□ -0.86
LDLR-205ENST00000557933 PPBPP02775 128 aa9.65□□□□□ -0.87
LDLR-205ENST00000557933 NDPQ00604 133 aa9.65□□□□□ -0.87
LDLR-205ENST00000557933 SMIM15Q7Z3B0 74 aa9.65□□□□□ -0.87
LDLR-205ENST00000557933 ABHD17AQ96GS6 310 aa9.65□□□□□ -0.87
LDLR-205ENST00000557933 MS4A6AQ9H2W1 248 aa9.65□□□□□ -0.87
LDLR-205ENST00000557933 K7EQM0 130 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 SMAD7O15105 426 aaKnown RBP9.64□□□□□ -0.87
LDLR-205ENST00000557933 NDUFS7O75251 213 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 LEPP41159 167 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 AMTNQ6UX39 209 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 INS-IGF2F8WCM5 200 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 IGLV1-47P01700 117 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 APOBEC3AP31941 199 aaPredicted RBP9.64□□□□□ -0.87
LDLR-205ENST00000557933 PRORYQ9H606 182 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 AAMDCQ9H7C9 122 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 TMEM160Q9NX00 188 aa9.64□□□□□ -0.87
LDLR-205ENST00000557933 NHP2Q9NX24 153 aaKnown RBP9.64□□□□□ -0.87
LDLR-205ENST00000557933 H3BRN7 92 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 DEFB1P60022 68 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 S100A7AQ86SG5 101 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 C9orf118A6NHY6 69 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 HBDP02042 147 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 CRYGBP07316 175 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 ARL6IP6Q8N6S5 226 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 FOXC2Q99958 501 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 RAXQ9Y2V3 346 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 UFC1Q9Y3C8 167 aa9.63□□□□□ -0.87
LDLR-205ENST00000557933 RBPJQ06330 500 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 Q8NA96 180 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 PRRG2O14669 202 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 TRGV3P03979 118 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 FAM57AQ8TBR7 257 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 GTSF1LQ9H1H1 148 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 FAM90A27PA6NNH2 459 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 ADAMTSL5Q6ZMM2 481 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 BOD1L2Q8IYS8 172 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 NUP37Q8NFH4 326 aa9.62□□□□□ -0.87
LDLR-205ENST00000557933 TEX48A0A1B0GUV7 120 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.61□□□□□ -0.87
LDLR-205ENST00000557933 A6NDN8 102 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 EFNA4P52798 201 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 LINC00311Q8N616 119 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 SMIM12Q96EX1 92 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 SHISA9B4DS77 424 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 TMEM238C9JI98 176 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 PLP1P60201 277 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 UFSP1Q6NVU6 142 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 IL17RELQ6ZVW7 336 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 DYNAPQ8N1N2 210 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 PRR25Q96S07 402 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 LINC00527Q9UJ94 153 aa9.61□□□□□ -0.87
LDLR-205ENST00000557933 K7EP34 96 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 ZC2HC1BQ5TFG8 222 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 GTF2H5Q6ZYL4 71 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 WFDC12Q8WWY7 111 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 TMEM158Q8WZ71 300 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 IGKV3-7A0A075B6H7 116 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 TRAV40A0A0B4J280 105 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 WI2-2373I1.2A0A1W2PRP0 233 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 TNFRSF13BO14836 293 aaPredicted RBP9.6□□□□□ -0.87
LDLR-205ENST00000557933 HOXB4P17483 251 aaPredicted RBP9.6□□□□□ -0.87
LDLR-205ENST00000557933 SEC11AP67812 179 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 ECSCRQ19T08 205 aa9.6□□□□□ -0.87
LDLR-205ENST00000557933 A0A1W2PPM0 123 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 MRPS12O15235 138 aaKnown RBP9.59□□□□□ -0.87
LDLR-205ENST00000557933 NDUFA3O95167 84 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 SMAGPQ0VAQ4 97 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 C16orf54Q6UWD8 224 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 SH2D6Q7Z4S9 175 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 FANCD2OSQ96PS1 177 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 TMEM14CQ9P0S9 112 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 TMEM30BQ3MIR4 351 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 C3orf36Q3SXR2 165 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 SAMD5Q5TGI4 173 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 JKAMPQ9P055 326 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 UTP20O75691 2785 aaKnown RBP9.59□□□□□ -0.87
LDLR-205ENST00000557933 SETD2Q9BYW2 2564 aaPredicted RBP9.59□□□□□ -0.87
LDLR-205ENST00000557933 F8W735 103 aaPredicted RBP9.59□□□□□ -0.87
LDLR-205ENST00000557933 KLRB1Q12918 225 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 SMAD5-AS1Q9Y6J3 95 aa9.59□□□□□ -0.87
LDLR-205ENST00000557933 HIVEP3Q5T1R4 2406 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 USP9YO00507 2555 aaPredicted RBP9.58□□□□□ -0.88
LDLR-205ENST00000557933 H3BRM9 83 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 NBR2O15453 112 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 HSD52Q0P140 79 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 ZNF575Q86XF7 245 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 MAPKAPK5-AS1Q8N8E1 139 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 POLQO75417 2590 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 C2CD3Q4AC94 2353 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 TNFRSF6BO95407 300 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 LGALS9BQ3B8N2 356 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 LGALS9CQ6DKI2 356 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 CFHR4Q92496 578 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 CHAC1Q9BUX1 264 aa9.58□□□□□ -0.88
LDLR-205ENST00000557933 ZANQ9Y493 2812 aa9.57□□□□□ -0.88
LDLR-205ENST00000557933 H3BMG7 143 aa9.57□□□□□ -0.88
LDLR-205ENST00000557933 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.57□□□□□ -0.88
LDLR-205ENST00000557933 IGHG4P01861 327 aa9.57□□□□□ -0.88
LDLR-205ENST00000557933 FABP2P12104 132 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms