RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CASC10Q5T4H9 136 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 TMEM78Q5T7P6 136 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 C9orf47Q6ZRZ4 202 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 CMTM2Q8TAZ6 248 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 LINC00477Q96M19 166 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 AGPAT4-IT1Q9H0P7 198 aa9.81□□□□□ -0.84
SHMT2-228ENST00000557302 PGPA6NDG6 321 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 UMAD1C9J7I0 102 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 RRN3P1Q2M238 152 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 TMEM256Q8N2U0 113 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 STOML3Q8TAV4 291 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 C11orf45Q8TAV5 145 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 SUN5Q8TC36 379 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 VGLL1Q99990 258 aa9.8□□□□□ -0.84
SHMT2-228ENST00000557302 TMEM189A5PLL7 270 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 RBAKDNA6NC62 111 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 MAP1LC3B2A6NCE7 125 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 CXorf65A6NEN9 183 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 DIRC3C9JPN6 131 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 J3KRW8 73 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 SLC25A5P05141 298 aaKnown RBP9.79□□□□□ -0.84
SHMT2-228ENST00000557302 CD300CQ08708 224 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 PMS2P11Q13670 270 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 GFI1BQ5VTD9 330 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 ARL6IP6Q8N6S5 226 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 TMED6Q8WW62 240 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 LINC01587Q99440 93 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 C20orf144Q9BQM9 153 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 MAP1LC3BQ9GZQ8 125 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 RPH3ALQ9UNE2 315 aa9.79□□□□□ -0.84
SHMT2-228ENST00000557302 STARD9Q9P2P6 4700 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 LOC102723971A0A1B0GUV8 181 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 FHITP49789 147 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 ZNF138P52744 262 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 EMP1P54849 157 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 FGF8P55075 233 aaPredicted RBP9.78□□□□□ -0.84
SHMT2-228ENST00000557302 NANOS2P60321 138 aaKnown RBP9.78□□□□□ -0.84
SHMT2-228ENST00000557302 KIR3DS1Q14943 382 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 ZFP69Q49AA0 526 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 FAM213BQ8TBF2 198 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 FAM19A4Q96LR4 140 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 ZNF492Q9P255 531 aa9.78□□□□□ -0.84
SHMT2-228ENST00000557302 H7BYZ3 331 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 NMBP08949 121 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 CRISP2P16562 243 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 TAS2R60P59551 318 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 EIF5AL1Q6IS14 154 aaKnown RBP9.77□□□□□ -0.85
SHMT2-228ENST00000557302 DPPA3Q6W0C5 159 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 GOLT1AQ6ZVE7 132 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 C5orf17Q8NAS9 161 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 Q8TAT8 98 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 NIPSNAP3BQ9BS92 247 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 TMPRSS5Q9H3S3 457 aa9.77□□□□□ -0.85
SHMT2-228ENST00000557302 TRAV12-3A0A0B4J271 114 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 TRBV7-9A0A0J9YWB2 115 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 A0A1W2PRE2 83 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 C7orf71A4D174 169 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 ZNF705GA8MUZ8 300 aaPredicted RBP9.76□□□□□ -0.85
SHMT2-228ENST00000557302 KLLNB2CW77 178 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 GPX1P07203 203 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 SUMO1P63165 101 aaKnown RBP9.76□□□□□ -0.85
SHMT2-228ENST00000557302 GNG5P63218 68 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 SLC51BQ86UW2 128 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 C9orf62Q8N4C0 152 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 CELA1Q9UNI1 258 aa9.76□□□□□ -0.85
SHMT2-228ENST00000557302 SERTM2A0A1B0GWG4 89 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 NUPR2A6NF83 97 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 GGTLC3B5MD39 225 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 LCE2BO14633 110 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 PRM2P04554 102 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 HTN1P15515 57 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 RNASE4P34096 147 aaKnown RBP9.75□□□□□ -0.85
SHMT2-228ENST00000557302 UBE2G2P60604 165 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 ZFAND2AQ8N6M9 145 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 SFT2D1Q8WV19 159 aa9.75□□□□□ -0.85
SHMT2-228ENST00000557302 YTHDF2Q9Y5A9 579 aaKnown RBP9.75□□□□□ -0.85
SHMT2-228ENST00000557302 TEX48A0A1B0GUV7 120 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 K7EQM0 130 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 TCRAP04437 139 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 SPART-AS1P0CW21 52 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 BTN1A1Q13410 526 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 CCDC28AQ8IWP9 274 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 PHLDA1Q8WV24 401 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-228ENST00000557302 MBD3L1Q8WWY6 194 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 NKX6-2Q9C056 277 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-228ENST00000557302 LENEPQ9Y5L5 61 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 CSMD3Q7Z407 3707 aa9.74□□□□□ -0.85
SHMT2-228ENST00000557302 TENM2Q9NT68 2774 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 TRAV8-1A0A0A6YYK1 113 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 FAM74A7A6NL05 159 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 IFNA7P01567 189 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 H2AFB1P0C5Y9 115 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 AZU1P20160 251 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 RAB5CP51148 216 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 PRR9Q5T870 116 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 FAM222AQ5U5X8 452 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 CEMP1Q6PRD7 247 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-228ENST00000557302 ZNF493Q6ZR52 646 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 CYB561D1Q8N8Q1 229 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 TMEM263Q8WUH6 116 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms