RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 CD5P06127 495 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 RPL7P18124 248 aaKnown RBP6.65□□□□□ -1.34
SYNE2-224ENST00000557024 RAB14P61106 215 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 PAFAH1B2P68402 229 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 C1orf194Q5T5A4 169 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 SPATA31B1PQ5VZV4 182 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 LCN15Q6UWW0 184 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 PQLC2Q6ZP29 291 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 MIR17HGQ75NE6 70 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 TCF24Q7RTU0 167 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 ZNF680Q8NEM1 530 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 STXBP6Q8NFX7 210 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 RAB24Q969Q5 203 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 ZNF414Q96IQ9 312 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 GPR82Q96P67 336 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 PAXXQ9BUH6 204 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 OR51M1Q9H341 326 aa6.65□□□□□ -1.34
SYNE2-224ENST00000557024 SEPSECSQ9HD40 501 aaKnown RBP6.65□□□□□ -1.34
SYNE2-224ENST00000557024 TRAV5A0A0B4J249 113 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 MAP1LC3B2A6NCE7 125 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 DNASE2O00115 360 aaPredicted RBP6.64□□□□□ -1.35
SYNE2-224ENST00000557024 HMGB3O15347 200 aaKnown RBP6.64□□□□□ -1.35
SYNE2-224ENST00000557024 BUB3O43684 328 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 CXorf1O96002 111 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 APOHP02749 345 aaPredicted RBP6.64□□□□□ -1.35
SYNE2-224ENST00000557024 C16orf54Q6UWD8 224 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 SIGLEC15Q6ZMC9 328 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 TRPT1Q86TN4 253 aaKnown RBP6.64□□□□□ -1.35
SYNE2-224ENST00000557024 NUDT10Q8NFP7 164 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 SFT2D1Q8WV19 159 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 NUDT11Q96G61 164 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 MAP1LC3BQ9GZQ8 125 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 MS4A6AQ9H2W1 248 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 LRP1BQ9NZR2 4599 aa6.64□□□□□ -1.35
SYNE2-224ENST00000557024 A0A1B0GV50 99 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 KNCNA6PVL3 124 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 EIF3GO75821 320 aaKnown RBP eCLIP6.63□□□□□ -1.35
SYNE2-224ENST00000557024 STAG3L2P0CL84 134 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 STAG3L3P0CL85 134 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 FHITP49789 147 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 FGF8P55075 233 aaPredicted RBP6.63□□□□□ -1.35
SYNE2-224ENST00000557024 RNF212Q495C1 297 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 MORN5Q5VZ52 161 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 MORN3Q6PF18 240 aaPredicted RBP6.63□□□□□ -1.35
SYNE2-224ENST00000557024 SAT2Q96F10 170 aaPredicted RBP6.63□□□□□ -1.35
SYNE2-224ENST00000557024 SLC25A2Q9BXI2 301 aa6.63□□□□□ -1.35
SYNE2-224ENST00000557024 APOBP04114 4563 aaKnown RBP6.63□□□□□ -1.35
SYNE2-224ENST00000557024 OR10J4P0C629 311 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 ARL14EPLP0DKL9 152 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 INAFM2P0DMQ5 153 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 PYYP10082 97 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 HIST1H1EP10412 219 aaKnown RBP6.62□□□□□ -1.35
SYNE2-224ENST00000557024 GCHFRP30047 84 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 MEOX2P50222 304 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 UBE2L3P68036 154 aaKnown RBP6.62□□□□□ -1.35
SYNE2-224ENST00000557024 CSNK1G2-AS1Q8NCQ2 148 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 BLNKQ8WV28 456 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 GLMPQ8WWB7 406 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 MBD3L1Q8WWY6 194 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 TMEM167BQ9NRX6 74 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 TMEM14CQ9P0S9 112 aa6.62□□□□□ -1.35
SYNE2-224ENST00000557024 EPM2AB3EWF7 344 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 IFNA1P01562 189 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 SNRPCP09234 159 aaKnown RBP6.61□□□□□ -1.35
SYNE2-224ENST00000557024 NBEAP1P0C6P0 100 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 HTN3P15516 51 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 ID1P41134 155 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 PSMB3P49720 205 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 PPT1P50897 306 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 EMP1P54849 157 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 ZNF726P1Q15940 193 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 GUK1Q16774 197 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 ACTL10Q5JWF8 245 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 SSX7Q7RTT5 188 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 SPATA12Q7Z6I5 190 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 AAMDCQ9H7C9 122 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 NRN1Q9NPD7 142 aa6.61□□□□□ -1.35
SYNE2-224ENST00000557024 A0A087X0K7 114 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 TRAV2A0A0B4J234 112 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 H3BTX0 84 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 ZNF688P0C7X2 276 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 SPART-AS1P0CW21 52 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 PSG9Q00887 426 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 IFITM2Q01629 132 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 SAMD13Q5VXD3 122 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 C6orf223Q8N319 242 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 PCNPQ8WW12 178 aaKnown RBP6.6□□□□□ -1.35
SYNE2-224ENST00000557024 FAM210BQ96KR6 192 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 FAM167A-AS1Q96KT0 104 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 SLC50A1Q9BRV3 221 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 TMPRSS5Q9H3S3 457 aa6.6□□□□□ -1.35
SYNE2-224ENST00000557024 AGRNO00468 2067 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 TRAV1-1A0A0B4J248 108 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 UBE2G2P60604 165 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 SNRPD3P62318 126 aaKnown RBP6.59□□□□□ -1.35
SYNE2-224ENST00000557024 CST9LP1Q5W188 147 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 FXYD5Q96DB9 178 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 ZNF503Q96F45 646 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 KRTAP9-9Q9BYP9 154 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms