RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 FOXC2Q99958 501 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 RASL11BQ9BPW5 248 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 SHANK2-AS3Q9BTD1 123 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 TPPP3Q9BW30 176 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 C1QTNF4Q9BXJ3 329 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 ZNF71Q9NQZ8 489 aaPredicted RBP2.24□□□□□ -2.05
SLIRP-208ENST00000556956 NHP2Q9NX24 153 aaKnown RBP2.24□□□□□ -2.05
SLIRP-208ENST00000556956 SPRR3Q9UBC9 169 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 PROCRQ9UNN8 238 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 CHD9Q3L8U1 2897 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 MKI67P46013 3256 aaKnown RBP2.24□□□□□ -2.05
SLIRP-208ENST00000556956 BRWD1Q9NSI6 2320 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 CHD7Q9P2D1 2997 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 CEP290O15078 2479 aa2.24□□□□□ -2.05
SLIRP-208ENST00000556956 THADAQ6YHU6 1953 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TNRC6AQ8NDV7 1962 aaKnown RBP2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TNRC18O15417 2968 aaPredicted RBP2.23□□□□□ -2.05
SLIRP-208ENST00000556956 SPTBP11277 2137 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 PDE4DIPQ5VU43 2346 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 REV3LO60673 3130 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TDRD6O60522 2096 aaKnown RBP2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TRBV20-1A0A075B6N2 111 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 A0A087WX48 190 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TRAV8-1A0A0A6YYK1 113 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 MYMXA0A1B0GTQ4 84 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 A0A1W2PPI3 338 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TMEM213A2RRL7 107 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TMEM8BA6NDV4 472 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 FABP5P3A8MUU1 101 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 E7EUB6 86 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 H3BRN7 92 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 H3BTX0 84 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 H7C1H1 209 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 K7ERJ3 54 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 M0R1B8 84 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 SCGB2A1O75556 95 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TNFRSF6BO95407 300 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 NPYP01303 97 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 IGHV3-48P01763 117 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 IGHG3P01860 377 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 RBP4P02753 201 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 CRYGBP07316 175 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 PLNP26678 52 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 DSCR9P59020 149 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 GAGE5Q13069 117 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 GAGE6Q13070 117 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 ETDBQ3ZM63 59 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 UTF1Q5T230 341 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 ZC2HC1BQ5TFG8 222 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 ZFAND6Q6FIF0 208 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 HCP5Q6MZN7 132 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 SIGLEC15Q6ZMC9 328 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 ASCL5Q7RTU5 278 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 SH2D6Q7Z4S9 175 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 PRR26Q8N8Z3 221 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 DEFB108BQ8NET1 73 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 PPDPFLQ8WWR9 84 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TMEM158Q8WZ71 300 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 DLX4Q92988 240 aaPredicted RBP2.23□□□□□ -2.05
SLIRP-208ENST00000556956 RNF5Q99942 180 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 SPRY4Q9C004 299 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 RAB1BQ9H0U4 201 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TMEM133Q9H2Q1 129 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 MAP6D1Q9H9H5 199 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 TMEM160Q9NX00 188 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 MRPL36Q9P0J6 103 aaKnown RBP2.23□□□□□ -2.05
SLIRP-208ENST00000556956 ERG28Q9UKR5 140 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 HHLA3Q9XRX5 114 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 SLC25A15Q9Y619 301 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 PRRC2BQ5JSZ5 2229 aaKnown RBP2.23□□□□□ -2.05
SLIRP-208ENST00000556956 SPAG17Q6Q759 2223 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 ALPK2Q86TB3 2170 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 CDH23Q9H251 3354 aa2.23□□□□□ -2.05
SLIRP-208ENST00000556956 MPDZO75970 2070 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 KMT2EQ8IZD2 1858 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 EXPH5Q8NEV8 1989 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 IGLV3-9A0A075B6K5 115 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 TMSB15BA0A087X1C1 80 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 IGKV2D-26A0A0A0MRZ7 120 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 TRAV12-1A0A0B4J245 112 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 TRAV40A0A0B4J280 105 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 LINC01549A6NIU2 74 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 A8MWV9 139 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 SMKR1H3BMG3 65 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 I3L2K1 104 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 M0QXV9 152 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 NDUFB3O43676 98 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 TSPAN13O95857 204 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 IGHV1-46P01743 117 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 ORM1P02763 201 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 ZNF688P0C7X2 276 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 IGLC6P0CF74 106 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 PSMB2P49721 201 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 FXYD7P58549 80 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 RPL36AP83881 106 aaKnown RBP2.22□□□□□ -2.05
SLIRP-208ENST00000556956 LAGE3Q14657 143 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 C10orf55Q5SWW7 151 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 FAM201AQ5SY85 155 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 HES3Q5TGS1 186 aa2.22□□□□□ -2.05
SLIRP-208ENST00000556956 TEX29Q8N6K0 151 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms