RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LYZL1Q6UWQ5 148 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 SIT1Q9Y3P8 196 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 TRAV17A0A0B4J275 112 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 K7ENP7 123 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 IGLV2-11P01706 119 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 DEFB121Q5J5C9 76 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 SCGB1D4Q6XE38 83 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 Q8N8P6 123 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 Q9H3A6 140 aa10.8□□□□□ -0.68
SHMT2-226ENST00000556825 ZNF256Q9Y2P7 627 aaPredicted RBP10.8□□□□□ -0.68
SHMT2-226ENST00000556825 CEP192Q8TEP8 1941 aa10.79□□□□□ -0.68
SHMT2-226ENST00000556825 TMEM170BQ5T4T1 132 aa10.79□□□□□ -0.68
SHMT2-226ENST00000556825 LINC00305Q7Z4B0 112 aa10.79□□□□□ -0.68
SHMT2-226ENST00000556825 S1PR3Q99500 378 aa10.79□□□□□ -0.68
SHMT2-226ENST00000556825 FOXB1Q99853 325 aa10.79□□□□□ -0.68
SHMT2-226ENST00000556825 PYGO1Q9Y3Y4 419 aa10.79□□□□□ -0.68
SHMT2-226ENST00000556825 ZNF815PA8K554 130 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 Q8IYB0 196 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 PLEKHB2Q96CS7 222 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 SLC25A39Q9BZJ4 359 aaPredicted RBP10.78□□□□□ -0.68
SHMT2-226ENST00000556825 IGHV3-43A0A0B4J1X8 118 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 IGHV1OR15-9A0A0B4J2B8 117 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 hADV29S1A0JD25 119 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 DEFB108AA8MXU0 73 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 H7C1H1 209 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 IGHV3-43DP0DP04 118 aa10.78□□□□□ -0.68
SHMT2-226ENST00000556825 RPL35AP18077 110 aaKnown RBP10.78□□□□□ -0.68
SHMT2-226ENST00000556825 ZFAND5O76080 213 aa10.77□□□□□ -0.68
SHMT2-226ENST00000556825 HOXB4P17483 251 aaPredicted RBP10.77□□□□□ -0.68
SHMT2-226ENST00000556825 Q71RC1 249 aaPredicted RBP10.77□□□□□ -0.68
SHMT2-226ENST00000556825 DEFB119Q8N690 84 aa10.77□□□□□ -0.68
SHMT2-226ENST00000556825 V9GYY9 64 aa10.77□□□□□ -0.68
SHMT2-226ENST00000556825 TNRC6BQ9UPQ9 1833 aaKnown RBP10.77□□□□□ -0.69
SHMT2-226ENST00000556825 ABCA7Q8IZY2 2146 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 TRAV12-1A0A0B4J245 112 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 F8VRH5 84 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 PLAUP00749 431 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 PLXDC1Q8IUK5 500 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 DEFB123Q8N688 67 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 FAM19A4Q96LR4 140 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 PRUNE2Q8WUY3 3088 aa10.77□□□□□ -0.69
SHMT2-226ENST00000556825 PRCDQ00LT1 54 aa10.76□□□□□ -0.69
SHMT2-226ENST00000556825 OTORQ9NRC9 128 aa10.76□□□□□ -0.69
SHMT2-226ENST00000556825 CCL11P51671 97 aa10.76□□□□□ -0.69
SHMT2-226ENST00000556825 PSPNO60542 156 aa10.75□□□□□ -0.69
SHMT2-226ENST00000556825 ZNF883P0CG24 379 aa10.75□□□□□ -0.69
SHMT2-226ENST00000556825 RNASE2P10153 161 aaKnown RBP10.75□□□□□ -0.69
SHMT2-226ENST00000556825 ZNF415Q09FC8 603 aa10.75□□□□□ -0.69
SHMT2-226ENST00000556825 GOLT1AQ6ZVE7 132 aa10.75□□□□□ -0.69
SHMT2-226ENST00000556825 TRIOO75962 3097 aa10.75□□□□□ -0.69
SHMT2-226ENST00000556825 ACYP1P07311 99 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 COX6B1P14854 86 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 CRIP1P50238 77 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 C2orf82Q6UX34 121 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 TMEM86BQ8N661 226 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 DSCR8Q96T75 97 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 SS18L1O75177 396 aaPredicted RBP10.74□□□□□ -0.69
SHMT2-226ENST00000556825 IGHV3-13P01766 116 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 IGHV3-30P01768 117 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 IGHV3-33P01772 117 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 IGHV3-30-5P0DP03 117 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 SLC25A16P16260 332 aa10.74□□□□□ -0.69
SHMT2-226ENST00000556825 MRPL14Q6P1L8 145 aaKnown RBP10.74□□□□□ -0.69
SHMT2-226ENST00000556825 MYO15AQ9UKN7 3530 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 IGHV3-20A0A0C4DH32 117 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 A0A1W2PR77 199 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 ZNF22P17026 224 aaPredicted RBP10.73□□□□□ -0.69
SHMT2-226ENST00000556825 PRDX2P32119 198 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 LINC00336Q6ZUF6 198 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 FAM90A1Q86YD7 464 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 RNF185Q96GF1 192 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 ZNF71Q9NQZ8 489 aaPredicted RBP10.73□□□□□ -0.69
SHMT2-226ENST00000556825 PKIGQ9Y2B9 76 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 A0A0J9YY99 117 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 ZNHIT1O43257 154 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 COX6A1P12074 109 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 GP9P14770 177 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 CXCL5P42830 114 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 SSR4P51571 173 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 RPL39P5Q59GN2 51 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 CYSTM1Q9H1C7 97 aa10.73□□□□□ -0.69
SHMT2-226ENST00000556825 VCANP13611 3396 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 IGLV2-18A0A075B6J9 118 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 TRAV13-1A0A0B4J241 112 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 H3BT86 120 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 ENSAO43768 121 aaKnown RBP10.72□□□□□ -0.69
SHMT2-226ENST00000556825 HERVK_113P61574 105 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.72□□□□□ -0.69
SHMT2-226ENST00000556825 LINC00643Q86TS7 51 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 PRORYQ9H606 182 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 RPUSD1Q9UJJ7 312 aaKnown RBP10.72□□□□□ -0.69
SHMT2-226ENST00000556825 H3BTX0 84 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 SPINT2O43291 252 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 IGHV4-39P01824 125 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 GFERP55789 205 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 AAED1Q7RTV5 226 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 C5orf38Q86SI9 138 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 RPS19BP1Q86WX3 136 aaKnown RBP10.72□□□□□ -0.69
SHMT2-226ENST00000556825 C8orf31Q8N9H6 132 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 TMEM75Q8N9X5 138 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms