RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 GP9P14770 177 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 RASL11AQ6T310 242 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 FNDC10F2Z333 226 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 C15orf65H3BRN8 121 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 LHBP01229 141 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 WT1-ASQ06250 92 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 TIMM21Q9BVV7 248 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 LGALS1P09382 135 aaKnown RBP6.53□□□□□ -1.36
SYNE2-220ENST00000555612 ANXA2RQ3ZCQ2 193 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 SPRNQ5BIV9 151 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 NKAPP1Q8N9T2 125 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 PIFOQ8TCI5 191 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 SMPXQ9UHP9 88 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 TRBV24-1A0A075B6N3 115 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 A8MWV9 139 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 TANC1Q9C0D5 1861 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 TRBV19A0A075B6N1 114 aa6.52□□□□□ -1.36
SYNE2-220ENST00000555612 CLPSL2Q6UWE3 100 aa6.52□□□□□ -1.36
SYNE2-220ENST00000555612 MPDZO75970 2070 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 PHF3Q92576 2039 aaKnown RBP6.52□□□□□ -1.37
SYNE2-220ENST00000555612 PCNX1Q96RV3 2341 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 A0A1B0GUS0 222 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 THAP8Q8NA92 274 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 ERG28Q9UKR5 140 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 IGKV1OR2-108A0A075B7D4 117 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 CENPVL3A0A0U1RRI6 287 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 MYMXA0A1B0GTQ4 84 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 TMEM213A2RRL7 107 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 Q9HAA7 133 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 DKK4Q9UBT3 224 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 CREBBPQ92793 2442 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 HAPLN4Q86UW8 402 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 TMEM75Q8N9X5 138 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 TMEM243Q9BU79 118 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 NOP10Q9NPE3 64 aaKnown RBP6.52□□□□□ -1.37
SYNE2-220ENST00000555612 IGKV2D-24A0A075B6R9 120 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 TRAV8-2A0A0B4J237 113 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 A0A1W2PNU3 283 aaPredicted RBP6.52□□□□□ -1.37
SYNE2-220ENST00000555612 LEPROTO15243 131 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 IGKV1-39P01597 117 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 ANGP03950 147 aaKnown RBP6.52□□□□□ -1.37
SYNE2-220ENST00000555612 IGKV1D-39P04432 117 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 APRG1Q8IVJ8 170 aa6.52□□□□□ -1.37
SYNE2-220ENST00000555612 PFN2P35080 140 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 BLCAPP62952 87 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 KIAA2026Q5HYC2 2103 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 VWC2LB2RUY7 222 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 H3BUA1 57 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 C5orf30Q96GV9 206 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 LRRK1Q38SD2 2015 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 YLPM1P49750 1951 aaKnown RBP6.51□□□□□ -1.37
SYNE2-220ENST00000555612 F6UB75 175 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 TP53TG1Q9Y2A0 90 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 H3BRN7 92 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 TNFRSF6BO95407 300 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 RSPO1Q2MKA7 263 aaPredicted RBP6.51□□□□□ -1.37
SYNE2-220ENST00000555612 PLXNA4Q9HCM2 1894 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 ATXN8Q156A1 80 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 NOTCH2Q04721 2471 aa6.51□□□□□ -1.37
SYNE2-220ENST00000555612 DAZAP2Q15038 168 aaPredicted RBP6.5□□□□□ -1.37
SYNE2-220ENST00000555612 NOTCH3Q9UM47 2321 aa6.5□□□□□ -1.37
SYNE2-220ENST00000555612 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.5□□□□□ -1.37
SYNE2-220ENST00000555612 I3L3M4 83 aa6.5□□□□□ -1.37
SYNE2-220ENST00000555612 NXPH4O95158 308 aa6.5□□□□□ -1.37
SYNE2-220ENST00000555612 DOCK10Q96BY6 2186 aa6.5□□□□□ -1.37
SYNE2-220ENST00000555612 FOXE3Q13461 319 aa6.5□□□□□ -1.37
SYNE2-220ENST00000555612 PMVKQ15126 192 aa6.5□□□□□ -1.37
SYNE2-220ENST00000555612 ADCYAP1P18509 176 aa6.5□□□□□ -1.37
SYNE2-220ENST00000555612 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.49□□□□□ -1.37
SYNE2-220ENST00000555612 TRAV26-2A0A0B4J265 109 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 CXCL1P09341 107 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 ZFP36P26651 326 aaKnown RBP6.49□□□□□ -1.37
SYNE2-220ENST00000555612 LINC01559Q495D7 138 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 NEGR1Q7Z3B1 354 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BKO60814 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BJP06899 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BOP23527 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BBP33778 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BDP58876 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BCP62807 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST2H2BEQ16778 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.49□□□□□ -1.37
SYNE2-220ENST00000555612 FOXI2Q6ZQN5 318 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BHQ93079 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BNQ99877 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 HIST1H2BMQ99879 126 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 TMEM126AQ9H061 195 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 LY96Q9Y6Y9 160 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 FNDC4Q9H6D8 234 aaPredicted RBP6.49□□□□□ -1.37
SYNE2-220ENST00000555612 FANCMQ8IYD8 2048 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 MRPL52Q86TS9 123 aaKnown RBP6.49□□□□□ -1.37
SYNE2-220ENST00000555612 SDHAF1A6NFY7 115 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 NDUFS6O75380 124 aaKnown RBP6.49□□□□□ -1.37
SYNE2-220ENST00000555612 IL15RAQ13261 267 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 Q6ZQT7 251 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 ATP6V0BQ99437 205 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 PRORYQ9H606 182 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 LAMTOR2Q9Y2Q5 125 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 PRSS29PA6NIE9 313 aa6.49□□□□□ -1.37
SYNE2-220ENST00000555612 OR11H6Q8NGC7 330 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms