RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 MLST8Q9BVC4 326 aa8.57□□□□□ -1.04
SHMT2-216ENST00000554975 SAMD10Q9BYL1 202 aa8.57□□□□□ -1.04
SHMT2-216ENST00000554975 RPH3ALQ9UNE2 315 aa8.57□□□□□ -1.04
SHMT2-216ENST00000554975 IGHV3-21A0A0B4J1V1 117 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 LCE6AA0A183 80 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 OR2J3O76001 311 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 APCSP02743 223 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 CT45A10P0DMU9 189 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 IGLC2P0DOY2 106 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 RAB4AP20338 218 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 TCL1AP56279 114 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 HBBP68871 147 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 TCTEX1D4Q5JR98 221 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 C9orf152Q5JTZ5 239 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 PRR27Q6MZM9 219 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 MRPL54Q6P161 138 aaKnown RBP8.56□□□□□ -1.04
SHMT2-216ENST00000554975 ZNF491Q8N8L2 437 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 NUDT10Q8NFP7 164 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 NUDT11Q96G61 164 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 RABAC1Q9UI14 185 aa8.56□□□□□ -1.04
SHMT2-216ENST00000554975 TRAV34A0A0B4J273 112 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 C19orf71A6NCJ1 209 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 NPIPB6E9PJ23 425 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 PF4V1P10720 104 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 BLCAPP62952 87 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 LBHQ53QV2 105 aaPredicted RBP8.55□□□□□ -1.04
SHMT2-216ENST00000554975 SIGLEC15Q6ZMC9 328 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 RBPMS2Q6ZRY4 209 aaKnown RBP8.55□□□□□ -1.04
SHMT2-216ENST00000554975 C19orf35Q6ZS72 473 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 NHLRC2Q8NBF2 726 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 BORCS7Q96B45 105 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 FANCD2OSQ96PS1 177 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 NEU1Q99519 415 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 MOB4Q9Y3A3 225 aa8.55□□□□□ -1.04
SHMT2-216ENST00000554975 IGHV7-81A0A0B4J1V7 117 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 GRIFINA4D1Z8 144 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 HIGD1CA8MV81 97 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 SERF1AO75920 110 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 PF4P02776 101 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 NHLRC4P0CG21 123 aaPredicted RBP8.54□□□□□ -1.04
SHMT2-216ENST00000554975 DDTP30046 118 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 NDPQ00604 133 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 ASPHD1Q5U4P2 390 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 TOMM20LQ6UXN7 152 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 GOLT1AQ6ZVE7 132 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 MRPL52Q86TS9 123 aaKnown RBP8.54□□□□□ -1.04
SHMT2-216ENST00000554975 Q8N9W7 124 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 NUP35Q8NFH5 326 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 MUC7Q8TAX7 377 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 ASCL2Q99929 193 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 FAM103A1Q9BTL3 118 aaKnown RBP8.54□□□□□ -1.04
SHMT2-216ENST00000554975 NAGKQ9UJ70 344 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 FBXL7Q9UJT9 491 aa8.54□□□□□ -1.04
SHMT2-216ENST00000554975 A0A1B0GXF2 115 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 SH2D7A6NKC9 451 aaPredicted RBP8.53□□□□□ -1.04
SHMT2-216ENST00000554975 MRPS12O15235 138 aaKnown RBP8.53□□□□□ -1.04
SHMT2-216ENST00000554975 SRIP30626 198 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 KLF5Q13887 457 aaPredicted RBP8.53□□□□□ -1.04
SHMT2-216ENST00000554975 PSG3Q16557 428 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 UNQ5815/PRO19632Q6UWF5 114 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 EEF1AKMT3Q96AZ1 226 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 NDFIP1Q9BT67 221 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 GNB4Q9HAV0 340 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 CLEC5AQ9NY25 188 aa8.53□□□□□ -1.04
SHMT2-216ENST00000554975 A0A087X0K7 114 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 TRBV7-1A0A0A6YYK4 115 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 KIR2DL5BA0A0G2JN68 375 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 KIR2DL5BA0A0G2JPC4 375 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 FAM223BA6NKX1 122 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 M0QZK8 103 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 SCGB1D1O95968 90 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 AMTP48728 403 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 CRIP2P52943 208 aaPredicted RBP8.52□□□□□ -1.05
SHMT2-216ENST00000554975 RPS20P60866 119 aaKnown RBP8.52□□□□□ -1.05
SHMT2-216ENST00000554975 RELQ04864 619 aaPredicted RBP8.52□□□□□ -1.05
SHMT2-216ENST00000554975 RIGQ13278 110 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 SAPCD1Q5SSQ6 148 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 LEMD1Q68G75 181 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 FAM223AQ8IWN6 122 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 KIR2DL5AQ8N109 375 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 TMEM256Q8N2U0 113 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 LINC00482Q8N8I6 264 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 ZNF414Q96IQ9 312 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 LINC00479Q96M42 142 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 SLC50A1Q9BRV3 221 aa8.52□□□□□ -1.05
SHMT2-216ENST00000554975 DIRC3C9JPN6 131 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 H3BUA1 57 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 CHEK1O14757 476 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 ZNF324O75467 553 aaPredicted RBP8.51□□□□□ -1.05
SHMT2-216ENST00000554975 HSBP1O75506 76 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 C1orf194Q5T5A4 169 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 C16orf54Q6UWD8 224 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 C10orf99Q6UWK7 81 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 PRNTQ86SH4 94 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 OR2D3Q8NGH3 330 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 ZNF502Q8TBZ5 544 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 PSG8Q9UQ74 426 aa8.51□□□□□ -1.05
SHMT2-216ENST00000554975 ZNF705FA8MVS1 300 aaPredicted RBP8.5□□□□□ -1.05
SHMT2-216ENST00000554975 ATP6V0E1O15342 81 aa8.5□□□□□ -1.05
SHMT2-216ENST00000554975 SPINK4O60575 86 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms