RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 LEPP41159 167 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 TAS2R60P59551 318 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 PRR9Q5T870 116 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 Q8TAT8 98 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 FAM19A4Q96LR4 140 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 PRELID1Q9Y255 219 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 EPPK1P58107 5090 aaKnown RBP8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 A0A1W2PPV4 95 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 RNASE4P34096 147 aaKnown RBP8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 DAD1P61803 113 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 BTN1A1Q13410 526 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 KHDC3LQ587J8 217 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 SSX7Q7RTT5 188 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 TMEM256Q8N2U0 113 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 ZFAND2AQ8N6M9 145 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 INO80EQ8NBZ0 244 aaPredicted RBP8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 ASB13Q8WXK3 278 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 HYLS1Q96M11 299 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 ODF3Q96PU9 254 aa8.21□□□□□ -1.1
CCDC88C-208ENST00000554165 KMT2AQ03164 3969 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 H7BYZ3 331 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 ARL14EPLP0DKL9 152 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 TAS2R45P59539 299 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 ZNF266Q14584 549 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 LGALS9CQ6DKI2 356 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 C9orf47Q6ZRZ4 202 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 OR2G3Q8NGZ4 309 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 RNASE8Q8TDE3 154 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 RAB24Q969Q5 203 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 LINC00477Q96M19 166 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 NOP10Q9NPE3 64 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 RPH3ALQ9UNE2 315 aa8.2□□□□□ -1.1
CCDC88C-208ENST00000554165 C7orf71A4D174 169 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 PGPA6NDG6 321 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 KLLNB2CW77 178 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 ARPC5O15511 151 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 ZNF324O75467 553 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 CDC34P49427 236 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 GNG5P63218 68 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 OR11H4Q8NGC9 324 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 PSMG3Q9BT73 122 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 CYTL1Q9NRR1 136 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 ZNF492Q9P255 531 aa8.19□□□□□ -1.1
CCDC88C-208ENST00000554165 LYRM9A8MSI8 78 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 DIRC3C9JPN6 131 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 SLC25A5P05141 298 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 CRISP2P16562 243 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 ZNF138P52744 262 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 ZNF726P1Q15940 193 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 TMEM78Q5T7P6 136 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 LYPD1Q8N2G4 141 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 C16orf74Q96GX8 76 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 C20orf144Q9BQM9 153 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 OTORQ9NRC9 128 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 TP53TG3Q9ULZ0 132 aa8.18□□□□□ -1.1
CCDC88C-208ENST00000554165 BORCS7-ASMTA0A0B4J1R7 106 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 TEX48A0A1B0GUV7 120 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 GPX1P07203 203 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 STAG3L2P0CL84 134 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 STAG3L3P0CL85 134 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 GCHFRP30047 84 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 CSN1S1P47710 185 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 TMEM88Q6PEY1 159 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 PQLC2Q6ZP29 291 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 GOLT1AQ6ZVE7 132 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 TMEM263Q8WUH6 116 aaKnown RBP8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 NDUFAF3Q9BU61 184 aa8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 TIMM8BQ9Y5J9 83 aaPredicted RBP8.17□□□□□ -1.1
CCDC88C-208ENST00000554165 TRAV8-1A0A0A6YYK1 113 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 GAGE12BA1L429 117 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 F5H768 121 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 GAGE7O76087 117 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 GAGE12FP0CL80 117 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 GAGE12GP0CL81 117 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 GAGE12IP0CL82 117 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 TCTAP57738 103 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 SERF2P84101 59 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 ZNF493Q6ZR52 646 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 C11orf72Q8NBR9 251 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 TVP23CQ96ET8 276 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 SGK494Q96LW2 274 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 TMPRSS5Q9H3S3 457 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 GSN-AS1Q9NRJ2 163 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 DNAH6Q9C0G6 4158 aa8.16□□□□□ -1.1
CCDC88C-208ENST00000554165 RBAKDNA6NC62 111 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 FGF8P55075 233 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 MUC21Q5SSG8 566 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 Q6ZTI0 123 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 CCDC28AQ8IWP9 274 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 CMTM2Q8TAZ6 248 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 SUN5Q8TC36 379 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 GNPNAT1Q96EK6 184 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 PYGO2Q9BRQ0 406 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 ACTR3CQ9C0K3 210 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 KLF12Q9Y4X4 402 aa8.15□□□□□ -1.1
CCDC88C-208ENST00000554165 CBY3A6NI87 242 aa8.14□□□□□ -1.11
CCDC88C-208ENST00000554165 GGTLC3B5MD39 225 aa8.14□□□□□ -1.11
CCDC88C-208ENST00000554165 MBP02144 154 aa8.14□□□□□ -1.11
CCDC88C-208ENST00000554165 NMBP08949 121 aa8.14□□□□□ -1.11
CCDC88C-208ENST00000554165 IQCF2Q8IXL9 164 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms