RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 LINC01587Q99440 93 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 LENEPQ9Y5L5 61 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 LYRM9A8MSI8 78 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 KLLNB2CW77 178 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 BCL2L11O43521 198 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 CT45A10P0DMU9 189 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 GFI1BQ5VTD9 330 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 Q6ZNX1 250 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 TCTE3Q8IZS6 198 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 C2CD4CQ8TF44 421 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 TMEM263Q8WUH6 116 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 PYGO2Q9BRQ0 406 aa10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 YTHDF2Q9Y5A9 579 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-207ENST00000554051 IGKV2-40A0A087WW87 121 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 C7orf71A4D174 169 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 UMAD1C9J7I0 102 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 SMLR1H3BR10 107 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 K7EQM0 130 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 PFDN1O60925 122 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 IGKV2D-40P01614 121 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 GCHFRP30047 84 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 ZNF138P52744 262 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 EMP1P54849 157 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 CCDC28AQ8IWP9 274 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 SUN5Q8TC36 379 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 ST6GAL2Q96JF0 529 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 FAM19A4Q96LR4 140 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 ZNF492Q9P255 531 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 DKK2Q9UBU2 259 aa10.32□□□□□ -0.76
CCDC88C-207ENST00000554051 FBLL1A6NHQ2 334 aaKnown RBP10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 DIRC3C9JPN6 131 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 SEC11BP0C7V7 166 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 FAM222AQ5U5X8 452 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 Q6ZTC4 211 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 C5orf17Q8NAS9 161 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 ZNF680Q8NEM1 530 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 STOML3Q8TAV4 291 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 FAM210BQ96KR6 192 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 LINC00467Q9BRT7 94 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 AGPAT4-IT1Q9H0P7 198 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 CYTL1Q9NRR1 136 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 CELA1Q9UNI1 258 aa10.31□□□□□ -0.76
CCDC88C-207ENST00000554051 ZNF705GA8MUZ8 300 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-207ENST00000554051 GPX1P07203 203 aa10.3□□□□□ -0.76
CCDC88C-207ENST00000554051 ERCC8Q13216 396 aa10.3□□□□□ -0.76
CCDC88C-207ENST00000554051 C12orf74Q32Q52 190 aa10.3□□□□□ -0.76
CCDC88C-207ENST00000554051 DPPA3Q6W0C5 159 aa10.3□□□□□ -0.76
CCDC88C-207ENST00000554051 ZNF471Q9BX82 626 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-207ENST00000554051 NKX6-2Q9C056 277 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-207ENST00000554051 A0A1W2PRE2 83 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 PGPA6NDG6 321 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 HMGB3O15347 200 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 TPT1P13693 172 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 DAD1P61803 113 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 EIF5AL1Q6IS14 154 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 AKAP14Q86UN6 197 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 OR11H4Q8NGC9 324 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 RNASE8Q8TDE3 154 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 HYLS1Q96M11 299 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 VGLL1Q99990 258 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 TCEAL7Q9BRU2 100 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 NDFIP1Q9BT67 221 aa10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 TIMM8BQ9Y5J9 83 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-207ENST00000554051 DEFB131BA0A096LNP1 70 aa10.28□□□□□ -0.76
CCDC88C-207ENST00000554051 TRAV12-3A0A0B4J271 114 aa10.28□□□□□ -0.76
CCDC88C-207ENST00000554051 IQCF2Q8IXL9 164 aa10.28□□□□□ -0.76
CCDC88C-207ENST00000554051 ZFAND2AQ8N6M9 145 aa10.28□□□□□ -0.76
CCDC88C-207ENST00000554051 ARL2-SNX15V9GYD0 113 aa10.28□□□□□ -0.76
CCDC88C-207ENST00000554051 MAP1LC3B2A6NCE7 125 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 SNURFLB1AK76 121 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 J3KRW8 73 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 C1QBP02746 253 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 ANXA2RQ3ZCQ2 193 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 GOLT1AQ6ZVE7 132 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 TMUB2Q71RG4 321 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 LINC00476Q8WZB0 136 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 MAP1LC3BQ9GZQ8 125 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 RPH3ALQ9UNE2 315 aa10.27□□□□□ -0.77
CCDC88C-207ENST00000554051 RGS13O14921 159 aa10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 EIF3GO75821 320 aaKnown RBP eCLIP10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 TCRAP04437 139 aa10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 PRB4P10163 310 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 HTN1P15515 57 aa10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 IBA57Q5T440 356 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 EIF4E3Q8N5X7 224 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 Q8TAT8 98 aa10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 ATG101Q9BSB4 218 aa10.26□□□□□ -0.77
CCDC88C-207ENST00000554051 PLAC8L1A1L4L8 177 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 CBY3A6NI87 242 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 GGTLC3B5MD39 225 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 IGLL5B9A064 214 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 RNASE4P34096 147 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 PPT1P50897 306 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 RAB5CP51148 216 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 BTN1A1Q13410 526 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 KIR3DS1Q14943 382 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 ZNF726P1Q15940 193 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 ZFP69Q49AA0 526 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 Q6AWC8 147 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 CYB561D1Q8N8Q1 229 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms