RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DAZ1Q9NQZ3 744 aaKnown RBP20.1■□□□□ 0.81
CCDC88C-205ENST00000553403 ITPR3Q14573 2671 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 PRAC2D3DTV9 90 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 APCSP02743 223 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 FABP4P15090 132 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 FAM162BQ5T6X4 162 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 RNF152Q8N8N0 203 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 OR10D4PQ8NGN7 298 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 PGLYRP4Q96LB8 373 aa20.09■□□□□ 0.81
CCDC88C-205ENST00000553403 MAP1AP78559 2803 aaPredicted RBP20.08■□□□□ 0.81
CCDC88C-205ENST00000553403 Q0VG73 95 aa20.08■□□□□ 0.81
CCDC88C-205ENST00000553403 C16orf92Q96LL3 132 aa20.08■□□□□ 0.81
CCDC88C-205ENST00000553403 SH2D1AO60880 128 aa20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 RPLP1P05386 114 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 HBBP68871 147 aa20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 BMI1P35226 326 aa20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 GDF5OSQ5U4N7 250 aa20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 Q8TAT8 98 aa20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 SMPXQ9UHP9 88 aa20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 UFC1Q9Y3C8 167 aa20.07■□□□□ 0.8
CCDC88C-205ENST00000553403 AMBPP02760 352 aa20.06■□□□□ 0.8
CCDC88C-205ENST00000553403 Q6AWC8 147 aa20.06■□□□□ 0.8
CCDC88C-205ENST00000553403 IL17RELQ6ZVW7 336 aa20.06■□□□□ 0.8
CCDC88C-205ENST00000553403 RHPN1-AS1Q9BWJ2 59 aa20.06■□□□□ 0.8
CCDC88C-205ENST00000553403 GRIFINA4D1Z8 144 aa20.05■□□□□ 0.8
CCDC88C-205ENST00000553403 CD5LO43866 347 aa20.05■□□□□ 0.8
CCDC88C-205ENST00000553403 LGALS1P09382 135 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-205ENST00000553403 RIPPLY3P57055 190 aa20.05■□□□□ 0.8
CCDC88C-205ENST00000553403 ERCC8Q13216 396 aa20.05■□□□□ 0.8
CCDC88C-205ENST00000553403 TM4SF20Q53R12 229 aa20.05■□□□□ 0.8
CCDC88C-205ENST00000553403 PACRGQ96M98 296 aaPredicted RBP20.05■□□□□ 0.8
CCDC88C-205ENST00000553403 SOCS3O14543 225 aa20.04■□□□□ 0.8
CCDC88C-205ENST00000553403 GZMBP10144 247 aa20.04■□□□□ 0.8
CCDC88C-205ENST00000553403 SRSF2Q01130 221 aaKnown RBP20.04■□□□□ 0.8
CCDC88C-205ENST00000553403 TMEM18Q96B42 140 aa20.04■□□□□ 0.8
CCDC88C-205ENST00000553403 UBE2E2Q96LR5 201 aa20.04■□□□□ 0.8
CCDC88C-205ENST00000553403 PPP1R14DQ9NXH3 145 aa20.04■□□□□ 0.8
CCDC88C-205ENST00000553403 TMEM189A5PLL7 270 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 HAX1O00165 279 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 OR10J3Q5JRS4 329 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 C9orf47Q6ZRZ4 202 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 A8MWP6 167 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 CAMPP49913 170 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 RPS20P60866 119 aaKnown RBP20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 KRTAP1-1Q07627 177 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 SLAQ13239 276 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 TMEM256Q8N2U0 113 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 AGPAT4-IT1Q9H0P7 198 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 TP53TG3Q9ULZ0 132 aa20.03■□□□□ 0.8
CCDC88C-205ENST00000553403 ZFHX3Q15911 3703 aa20.02■□□□□ 0.8
CCDC88C-205ENST00000553403 ESDP10768 282 aa20.02■□□□□ 0.8
CCDC88C-205ENST00000553403 KIAA1644Q3SXP7 199 aa20.02■□□□□ 0.8
CCDC88C-205ENST00000553403 NRN1Q9NPD7 142 aa20.02■□□□□ 0.8
CCDC88C-205ENST00000553403 ZNF138P52744 262 aa20.01■□□□□ 0.79
CCDC88C-205ENST00000553403 TMEM78Q5T7P6 136 aa20.01■□□□□ 0.79
CCDC88C-205ENST00000553403 DUX5Q96PT3 197 aa20.01■□□□□ 0.79
CCDC88C-205ENST00000553403 A0A1B0GUS0 222 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 REC114Q7Z4M0 266 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 A0A1B0GUT8 65 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 A0A1B0GW15 77 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 SRIP30626 198 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 ZNF80P51504 273 aaPredicted RBP20■□□□□ 0.79
CCDC88C-205ENST00000553403 RIGQ13278 110 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 PYY3Q5JQD4 70 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 BAGE3Q86Y29 109 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 C20orf173Q96LM9 149 aa20■□□□□ 0.79
CCDC88C-205ENST00000553403 FABP5P3A8MUU1 101 aa19.99■□□□□ 0.79
CCDC88C-205ENST00000553403 FOSL1P15407 271 aa19.99■□□□□ 0.79
CCDC88C-205ENST00000553403 SAMD13Q5VXD3 122 aa19.99■□□□□ 0.79
CCDC88C-205ENST00000553403 ZNF738Q8NE65 137 aa19.99■□□□□ 0.79
CCDC88C-205ENST00000553403 OVOL1O14753 267 aa19.98■□□□□ 0.79
CCDC88C-205ENST00000553403 LENEPQ9Y5L5 61 aa19.98■□□□□ 0.79
CCDC88C-205ENST00000553403 LGALS9O00182 355 aa19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 NUPR1O60356 82 aa19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 GATD1Q8NB37 220 aa19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 LINC00310P59036 64 aa19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 RPL11P62913 178 aaKnown RBP19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 BORCS7Q96B45 105 aa19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 SSBP4Q9BWG4 385 aaPredicted RBP19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 YAE1D1Q9NRH1 226 aa19.97■□□□□ 0.79
CCDC88C-205ENST00000553403 SERF1AO75920 110 aa19.96■□□□□ 0.79
CCDC88C-205ENST00000553403 DNLZQ5SXM8 178 aa19.96■□□□□ 0.79
CCDC88C-205ENST00000553403 NIT2Q9NQR4 276 aa19.96■□□□□ 0.79
CCDC88C-205ENST00000553403 TMEM213A2RRL7 107 aa19.95■□□□□ 0.78
CCDC88C-205ENST00000553403 DNAJC9-AS1A6NH13 148 aa19.95■□□□□ 0.78
CCDC88C-205ENST00000553403 PAFAH1B2P68402 229 aa19.95■□□□□ 0.78
CCDC88C-205ENST00000553403 KLF5Q13887 457 aaPredicted RBP19.95■□□□□ 0.78
CCDC88C-205ENST00000553403 LINC00477Q96M19 166 aa19.95■□□□□ 0.78
CCDC88C-205ENST00000553403 IGHV4OR15-8A0A075B7B6 117 aa19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 A0A087WW49 117 aa19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 ARMS2P0C7Q2 107 aa19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 HIST1H1AQ02539 215 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 KLHDC1Q8N7A1 406 aa19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 ALKBH7Q9BT30 221 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 LINC01559Q495D7 138 aa19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 OR10J6PQ8NGY7 276 aa19.94■□□□□ 0.78
CCDC88C-205ENST00000553403 TMSB15BA0A087X1C1 80 aa19.93■□□□□ 0.78
CCDC88C-205ENST00000553403 F2Z2F3 143 aa19.93■□□□□ 0.78
CCDC88C-205ENST00000553403 FAM181BA6NEQ2 426 aa19.92■□□□□ 0.78
CCDC88C-205ENST00000553403 EDN2P20800 178 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms