RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FGF8P55075 233 aaPredicted RBP10.16□□□□□ -0.78
PTCH1-226ENST00000553011 NANOS2P60321 138 aaKnown RBP10.16□□□□□ -0.78
PTCH1-226ENST00000553011 GFI1BQ5VTD9 330 aa10.16□□□□□ -0.78
PTCH1-226ENST00000553011 C9orf47Q6ZRZ4 202 aa10.16□□□□□ -0.78
PTCH1-226ENST00000553011 LINC00477Q96M19 166 aa10.16□□□□□ -0.78
PTCH1-226ENST00000553011 TMPRSS5Q9H3S3 457 aa10.16□□□□□ -0.78
PTCH1-226ENST00000553011 RPH3ALQ9UNE2 315 aa10.16□□□□□ -0.78
PTCH1-226ENST00000553011 STARD9Q9P2P6 4700 aa10.16□□□□□ -0.78
PTCH1-226ENST00000553011 MAP1LC3B2A6NCE7 125 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 ZNF705GA8MUZ8 300 aaPredicted RBP10.15□□□□□ -0.78
PTCH1-226ENST00000553011 DIRC3C9JPN6 131 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 HBE1P02100 147 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 TPT1P13693 172 aaKnown RBP10.15□□□□□ -0.78
PTCH1-226ENST00000553011 GNG5P63218 68 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 EIF5AP63241 154 aaKnown RBP10.15□□□□□ -0.78
PTCH1-226ENST00000553011 RRN3P1Q2M238 152 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 TMEM78Q5T7P6 136 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 Q8TAT8 98 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 STOML3Q8TAV4 291 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 C11orf45Q8TAV5 145 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 CMTM2Q8TAZ6 248 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 RXFP4Q8TDU9 374 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 TMED6Q8WW62 240 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 FAM19A4Q96LR4 140 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 MAP1LC3BQ9GZQ8 125 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 TMEM167BQ9NRX6 74 aa10.15□□□□□ -0.78
PTCH1-226ENST00000553011 LOC102723971A0A1B0GUV8 181 aa10.14□□□□□ -0.79
PTCH1-226ENST00000553011 CXorf65A6NEN9 183 aa10.14□□□□□ -0.79
PTCH1-226ENST00000553011 EMP1P54849 157 aa10.14□□□□□ -0.79
PTCH1-226ENST00000553011 FAM74A1Q5RGS3 127 aa10.14□□□□□ -0.79
PTCH1-226ENST00000553011 LINC01587Q99440 93 aa10.14□□□□□ -0.79
PTCH1-226ENST00000553011 ZNF492Q9P255 531 aa10.14□□□□□ -0.79
PTCH1-226ENST00000553011 CELA1Q9UNI1 258 aa10.14□□□□□ -0.79
PTCH1-226ENST00000553011 RBAKDNA6NC62 111 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 SLC25A5P05141 298 aaKnown RBP10.13□□□□□ -0.79
PTCH1-226ENST00000553011 ZNF138P52744 262 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 ZFP69Q49AA0 526 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 GOLT1AQ6ZVE7 132 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 TMEM256Q8N2U0 113 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 C9orf62Q8N4C0 152 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 ZFAND2AQ8N6M9 145 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 FAM213BQ8TBF2 198 aa10.13□□□□□ -0.79
PTCH1-226ENST00000553011 TRAV12-3A0A0B4J271 114 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 C7orf71A4D174 169 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 KLLNB2CW77 178 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 GGTLC3B5MD39 225 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 UMAD1C9J7I0 102 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 HTN1P15515 57 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 CRISP2P16562 243 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 AZU1P20160 251 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 UBE2G2P60604 165 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 SUMO1P63165 101 aaKnown RBP10.12□□□□□ -0.79
PTCH1-226ENST00000553011 BTN1A1Q13410 526 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 PRR9Q5T870 116 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 ZNF767PQ75MW2 155 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 C20orf144Q9BQM9 153 aa10.12□□□□□ -0.79
PTCH1-226ENST00000553011 YTHDF2Q9Y5A9 579 aaKnown RBP10.12□□□□□ -0.79
PTCH1-226ENST00000553011 TRAV8-1A0A0A6YYK1 113 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 A0A1W2PRE2 83 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 TMEM189A5PLL7 270 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 H7BYZ3 331 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 GPX1P07203 203 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 RNASE4P34096 147 aaKnown RBP10.11□□□□□ -0.79
PTCH1-226ENST00000553011 TAS2R60P59551 318 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 ARL6IP6Q8N6S5 226 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 C5orf17Q8NAS9 161 aa10.11□□□□□ -0.79
PTCH1-226ENST00000553011 PHLDA1Q8WV24 401 aaPredicted RBP10.11□□□□□ -0.79
PTCH1-226ENST00000553011 A0A1B0GV50 99 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 NKX2-5P52952 324 aaPredicted RBP10.1□□□□□ -0.79
PTCH1-226ENST00000553011 C12orf74Q32Q52 190 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 FAM222AQ5U5X8 452 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 Q6ZQT7 251 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 SLC51BQ86UW2 128 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 SFT2D1Q8WV19 159 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 MBD3L1Q8WWY6 194 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 SGK494Q96LW2 274 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 NIPSNAP3BQ9BS92 247 aa10.1□□□□□ -0.79
PTCH1-226ENST00000553011 TRBV7-9A0A0J9YWB2 115 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 PLAC8L1A1L4L8 177 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 FAM74A7A6NL05 159 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 ZNF324O75467 553 aaPredicted RBP10.09□□□□□ -0.79
PTCH1-226ENST00000553011 TCRAP04437 139 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 NMBP08949 121 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 SPART-AS1P0CW21 52 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 CEMP1Q6PRD7 247 aaPredicted RBP10.09□□□□□ -0.79
PTCH1-226ENST00000553011 DPPA3Q6W0C5 159 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 Q6ZTC4 211 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 DKK2Q9UBU2 259 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 EPDR1Q9UM22 224 aa10.09□□□□□ -0.79
PTCH1-226ENST00000553011 NUPR2A6NF83 97 aa10.08□□□□□ -0.8
PTCH1-226ENST00000553011 H2AFB1P0C5Y9 115 aa10.08□□□□□ -0.8
PTCH1-226ENST00000553011 EIF5AL1Q6IS14 154 aaKnown RBP10.08□□□□□ -0.8
PTCH1-226ENST00000553011 TVP23CQ96ET8 276 aa10.08□□□□□ -0.8
PTCH1-226ENST00000553011 LENEPQ9Y5L5 61 aa10.08□□□□□ -0.8
PTCH1-226ENST00000553011 KMT2CQ8NEZ4 4911 aaKnown RBP10.07□□□□□ -0.8
PTCH1-226ENST00000553011 SERTM2A0A1B0GWG4 89 aa10.07□□□□□ -0.8
PTCH1-226ENST00000553011 IFNA7P01567 189 aa10.07□□□□□ -0.8
PTCH1-226ENST00000553011 CYB561D1Q8N8Q1 229 aa10.07□□□□□ -0.8
PTCH1-226ENST00000553011 RNASE8Q8TDE3 154 aaKnown RBP10.07□□□□□ -0.8
PTCH1-226ENST00000553011 TMEM263Q8WUH6 116 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms