RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RNASE6Q93091 150 aaKnown RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 IFI27L1Q96BM0 104 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 RASL11BQ9BPW5 248 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 NHP2Q9NX24 153 aaKnown RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 PSG8Q9UQ74 426 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 USP9YO00507 2555 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 HRNRQ86YZ3 2850 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 IGLV3-9A0A075B6K5 115 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 IGHV3OR16-13A0A075B7E8 117 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 IGHV3-74A0A0B4J1X5 117 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 CCL21O00585 134 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 TM4SF5O14894 197 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 FABP2P12104 132 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 ATP5IP56385 69 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 FAM104BQ5XKR9 115 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 STXBP6Q8NFX7 210 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 TRGV9Q99603 122 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 SPAG8Q99932 426 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 OTORQ9NRC9 128 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 SPANXB1Q9NS25 103 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 HIGD1AQ9Y241 93 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 U3KQK5 164 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 TRBV19A0A075B6N1 114 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 IGKV2-40A0A087WW87 121 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-214ENST00000552783 LINC01548A6NM66 108 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 TEX22C9J3V5 150 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 IGKV2D-40P01614 121 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-214ENST00000552783 HBDP02042 147 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 HLA-DMBP28068 263 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 RIGQ13278 110 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF493Q6ZR52 646 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 VGLL1Q99990 258 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 PIEZO1Q92508 2521 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 HIVEP3Q5T1R4 2406 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 CENPEQ02224 2701 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 TRBV25-1A0A075B6N4 114 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 GAGE12HA6NDE8 117 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM178BH3BS89 294 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 SMIM13P0DJ93 91 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 CT45A10P0DMU9 189 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 EGR2P11161 476 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-214ENST00000552783 GATA4P43694 442 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 ODF1Q14990 250 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 PIP4P1Q86T03 277 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 GATD1Q8NB37 220 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 OR5A1Q8NGJ0 315 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 OR9G4Q8NGQ1 327 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 CHAC1Q9BUX1 264 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 SCNM1Q9BWG6 230 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 MYO9AB2RTY4 2548 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 ZFYVE26Q68DK2 2539 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 NPIPB5A8MRT5 1133 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 SH2D1AO60880 128 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 MC5RP33032 325 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 CEACAM3P40198 252 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 Q6ZQT7 251 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 ORMDL3Q8N138 153 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 DPF1Q92782 380 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 TNFRSF14Q92956 283 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 TIMD4Q96H15 378 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 PSMG3-AS1Q96PY0 264 aa3.8□□□□□ -1.8
LIMA1-214ENST00000552783 CRYBG3Q68DQ2 2970 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 MYO18BQ8IUG5 2567 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM189A5PLL7 270 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 I3L2K1 104 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 MRPS12O15235 138 aaKnown RBP3.79□□□□□ -1.8
LIMA1-214ENST00000552783 IL4P05112 153 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 GRNP28799 593 aaKnown RBP3.79□□□□□ -1.8
LIMA1-214ENST00000552783 CKS2P33552 79 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 TWIST1Q15672 202 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 PVRIGQ6DKI7 326 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 SFTA2Q6UW10 78 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 OR4X2Q8NGF9 303 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 RNF185Q96GF1 192 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 SIGMAR1Q99720 223 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 IGHV3-49A0A0A0MS15 119 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 E7EQL1 145 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 IGHV1-8P0DP01 117 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 LEPP41159 167 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 KLRD1Q13241 179 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 FHL3Q13643 280 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 IGFL2Q6UWQ7 119 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 PPP1R27Q86WC6 154 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 C20orf78Q9BR46 151 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 SORL1Q92673 2214 aa3.79□□□□□ -1.8
LIMA1-214ENST00000552783 IGKV3-7A0A075B6H7 116 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 TRAV26-2A0A0B4J265 109 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 TRAV40A0A0B4J280 105 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 IGLL5B9A064 214 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 J3KRW8 73 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 K7EQM0 130 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 TIMM23O14925 209 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 SIVA1O15304 175 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 SMIM17P0DL12 118 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 RAB9AP51151 201 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 ZC2HC1BQ5TFG8 222 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 TEX36Q5VZQ5 186 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 ASCL5Q7RTU5 278 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 SMPXQ9UHP9 88 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 SIGLEC9Q9Y336 463 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms